Atomistry » Chlorine » PDB 6cub-6d3h » 6cy6
Atomistry »
  Chlorine »
    PDB 6cub-6d3h »
      6cy6 »

Chlorine in PDB 6cy6: Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Escherichia Coli in Complex with Tris(Hydroxymethyl)Aminomethane.

Enzymatic activity of Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Escherichia Coli in Complex with Tris(Hydroxymethyl)Aminomethane.

All present enzymatic activity of Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Escherichia Coli in Complex with Tris(Hydroxymethyl)Aminomethane.:
2.3.1.57;

Protein crystallography data

The structure of Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Escherichia Coli in Complex with Tris(Hydroxymethyl)Aminomethane., PDB code: 6cy6 was solved by E.V.Filippova, G.Minasov, O.Kiryukhina, W.F.Anderson, K.J.F.Satchell, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 93.10 / 1.75
Space group P 6 2 2
Cell size a, b, c (Å), α, β, γ (°) 107.499, 107.499, 65.021, 90.00, 90.00, 120.00
R / Rfree (%) 15.4 / 20.1

Other elements in 6cy6:

The structure of Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Escherichia Coli in Complex with Tris(Hydroxymethyl)Aminomethane. also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Escherichia Coli in Complex with Tris(Hydroxymethyl)Aminomethane. (pdb code 6cy6). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 8 binding sites of Chlorine where determined in the Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Escherichia Coli in Complex with Tris(Hydroxymethyl)Aminomethane., PDB code: 6cy6:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Chlorine binding site 1 out of 8 in 6cy6

Go back to Chlorine Binding Sites List in 6cy6
Chlorine binding site 1 out of 8 in the Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Escherichia Coli in Complex with Tris(Hydroxymethyl)Aminomethane.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Escherichia Coli in Complex with Tris(Hydroxymethyl)Aminomethane. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:30.3
occ:1.00
 O A:HOH332 3.0 24.0 1.0
O A:HOH404 3.1 51.8 1.0
N A:GLU15 3.4 25.5 1.0
CG A:GLU15 3.7 34.2 1.0
N A:ARG14 3.7 21.2 1.0
CB A:GLU15 3.8 30.4 1.0
CB A:GLU13 4.0 22.7 1.0
CB A:ARG14 4.0 25.8 1.0
CD A:GLU15 4.2 46.5 1.0
CA A:ARG14 4.2 22.0 1.0
CA A:GLU15 4.2 25.9 1.0
C A:ARG14 4.2 22.8 1.0
OE2 A:GLU15 4.4 48.2 1.0
C A:GLU13 4.5 22.1 1.0
OE1 A:GLU13 4.5 25.2 1.0
CA A:GLU13 4.7 20.7 1.0
OE1 A:GLU15 4.8 48.4 1.0
CG A:GLU13 4.9 25.0 1.0
CL A:CL208 5.0 47.1 1.0

Chlorine binding site 2 out of 8 in 6cy6

Go back to Chlorine Binding Sites List in 6cy6
Chlorine binding site 2 out of 8 in the Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Escherichia Coli in Complex with Tris(Hydroxymethyl)Aminomethane.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Escherichia Coli in Complex with Tris(Hydroxymethyl)Aminomethane. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:33.8
occ:1.00
 O A:HOH333 3.1 33.1 1.0
NH1 A:ARG59 3.1 25.6 1.0
N A:TYR32 3.2 30.2 1.0
NH2 A:ARG59 3.4 24.3 1.0
CA A:MET30 3.5 27.9 1.0
C A:MET30 3.6 30.9 1.0
CB A:TYR32 3.6 31.6 1.0
N A:ARG31 3.7 30.0 1.0
CD2 A:TYR32 3.7 29.1 1.0
O A:VAL29 3.7 30.1 1.0
CA A:TYR32 3.7 32.8 1.0
CZ A:ARG59 3.8 26.7 1.0
N A:TRP33 3.9 29.6 1.0
CG A:TYR32 4.0 30.6 1.0
C A:TYR32 4.1 33.8 1.0
O A:MET30 4.2 32.6 1.0
N A:MET30 4.2 30.0 1.0
C A:VAL29 4.3 31.7 1.0
C A:ARG31 4.3 37.5 1.0
CG1 A:VAL75 4.5 21.4 1.0
CD1 A:TRP33 4.5 29.6 1.0
C3 A:TRS210 4.5 44.5 1.0
CA A:ARG31 4.6 32.7 1.0
CB A:MET30 4.6 31.4 1.0
CG A:TRP33 4.7 25.9 1.0
CE2 A:TYR32 4.7 27.8 1.0
N A:TRS210 4.7 48.5 1.0
NE2 A:GLN87 4.8 47.7 1.0
OE2 A:GLU73 4.8 35.0 1.0
CB A:VAL75 4.8 19.8 1.0
CB A:TRP33 4.9 28.0 1.0
CG2 A:VAL75 4.9 20.6 1.0
NE1 A:TRP33 4.9 30.8 1.0
CA A:TRP33 4.9 29.2 1.0
O A:TYR32 5.0 38.6 1.0
CG A:MET30 5.0 33.4 1.0

Chlorine binding site 3 out of 8 in 6cy6

Go back to Chlorine Binding Sites List in 6cy6
Chlorine binding site 3 out of 8 in the Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Escherichia Coli in Complex with Tris(Hydroxymethyl)Aminomethane.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Escherichia Coli in Complex with Tris(Hydroxymethyl)Aminomethane. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:38.9
occ:1.00
 N A:ASP125 3.2 22.7 1.0
ND2 A:ASN128 3.5 32.4 1.0
O A:HOH346 3.6 41.7 0.5
CB A:ASP125 3.6 27.2 1.0
CG2 A:VAL124 3.8 28.5 1.0
C1 A:MPD216 3.8 56.9 1.0
O A:HOH346 3.9 34.8 0.5
CA A:ASP125 4.0 26.0 1.0
CB A:ASN128 4.1 29.7 1.0
CA A:VAL124 4.1 23.0 1.0
C A:VAL124 4.1 22.6 1.0
CG A:ASN128 4.3 32.2 1.0
CB A:VAL124 4.5 24.8 1.0
O4 A:MPD216 4.6 71.4 1.0
C3 A:MPD216 4.6 62.2 1.0
C2 A:MPD216 4.8 59.3 1.0
O A:ASP125 4.8 25.1 1.0
C A:ASP125 5.0 24.7 1.0

Chlorine binding site 4 out of 8 in 6cy6

Go back to Chlorine Binding Sites List in 6cy6
Chlorine binding site 4 out of 8 in the Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Escherichia Coli in Complex with Tris(Hydroxymethyl)Aminomethane.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Escherichia Coli in Complex with Tris(Hydroxymethyl)Aminomethane. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:33.5
occ:1.00
 O4 A:MPD212 2.8 54.5 1.0
NH2 A:ARG31 3.2 47.1 1.0
CE1 A:PHE150 3.8 27.6 1.0
CD A:ARG31 3.8 41.3 1.0
C4 A:MPD212 3.9 52.9 1.0
CB A:ARG31 4.1 35.6 1.0
C5 A:MPD212 4.1 42.7 1.0
CZ A:ARG31 4.2 47.6 1.0
C1 A:MPD214 4.2 50.8 1.0
CE1 A:TYR32 4.4 38.0 1.0
NE A:ARG31 4.4 42.4 1.0
CZ A:PHE150 4.4 25.1 1.0
CG A:ARG31 4.4 40.6 1.0
CD1 A:PHE150 4.7 26.6 1.0
O A:ARG31 5.0 35.7 1.0
CD1 A:TYR32 5.0 38.5 1.0

Chlorine binding site 5 out of 8 in 6cy6

Go back to Chlorine Binding Sites List in 6cy6
Chlorine binding site 5 out of 8 in the Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Escherichia Coli in Complex with Tris(Hydroxymethyl)Aminomethane.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Escherichia Coli in Complex with Tris(Hydroxymethyl)Aminomethane. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:40.2
occ:1.00
 OG A:SER45 3.1 27.3 1.0
NH2 A:ARG14 3.4 32.7 1.0
NH1 A:ARG14 3.5 35.3 1.0
CB A:SER45 3.8 26.1 1.0
CE2 A:PHE41 3.9 30.8 1.0
CZ A:ARG14 4.0 33.8 1.0
O A:HOH366 4.1 53.5 1.0
CG1 A:VAL42 4.4 27.4 1.0
CD2 A:PHE41 4.6 28.4 1.0
CZ A:PHE41 4.9 28.5 1.0

Chlorine binding site 6 out of 8 in 6cy6

Go back to Chlorine Binding Sites List in 6cy6
Chlorine binding site 6 out of 8 in the Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Escherichia Coli in Complex with Tris(Hydroxymethyl)Aminomethane.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Escherichia Coli in Complex with Tris(Hydroxymethyl)Aminomethane. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl206

b:38.0
occ:1.00
 N A:VAL142 3.1 25.2 1.0
NE A:ARG136 3.6 40.6 1.0
CA A:SER141 3.7 27.8 1.0
CG2 A:VAL142 3.8 30.3 1.0
CZ A:ARG136 3.9 52.2 1.0
CB A:VAL142 3.9 26.7 1.0
C A:SER141 3.9 25.2 1.0
NH2 A:ARG136 4.0 50.5 1.0
CA A:VAL142 4.1 25.1 1.0
CD A:ARG136 4.1 35.5 1.0
CB A:SER141 4.2 33.4 1.0
CG A:ARG136 4.4 30.8 1.0
OG A:SER141 4.5 33.8 1.0
NH1 A:ARG136 4.6 50.0 1.0
O A:PHE140 4.6 27.7 1.0
N A:SER141 4.9 24.5 1.0
O A:VAL142 5.0 27.4 1.0

Chlorine binding site 7 out of 8 in 6cy6

Go back to Chlorine Binding Sites List in 6cy6
Chlorine binding site 7 out of 8 in the Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Escherichia Coli in Complex with Tris(Hydroxymethyl)Aminomethane.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Escherichia Coli in Complex with Tris(Hydroxymethyl)Aminomethane. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl207

b:45.7
occ:1.00
 N A:TYR156 3.1 24.1 1.0
O A:HOH345 3.2 52.7 1.0
CA A:GLN155 3.7 27.2 1.0
CB A:GLN155 3.8 33.2 1.0
C A:GLN155 3.9 25.9 1.0
CD2 A:TYR156 3.9 26.3 1.0
CB A:TYR156 4.1 23.4 1.0
CA A:TYR156 4.1 22.3 1.0
CG A:TYR156 4.5 23.5 1.0
O A:TYR156 4.5 26.2 1.0
C A:TYR156 4.8 25.6 1.0
CE1 A:HIS148 4.8 35.5 1.0
CE2 A:TYR156 5.0 27.2 1.0
O A:GLY154 5.0 26.6 1.0

Chlorine binding site 8 out of 8 in 6cy6

Go back to Chlorine Binding Sites List in 6cy6
Chlorine binding site 8 out of 8 in the Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Escherichia Coli in Complex with Tris(Hydroxymethyl)Aminomethane.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Escherichia Coli in Complex with Tris(Hydroxymethyl)Aminomethane. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl208

b:47.1
occ:1.00
 O A:HOH404 3.0 51.8 1.0
O A:HOH315 3.3 47.9 1.0
NH1 A:ARG14 3.4 35.3 1.0
CG A:ARG14 3.6 28.0 1.0
CD A:ARG14 3.7 29.9 1.0
CB A:ARG14 3.9 25.8 1.0
C A:ARG14 3.9 22.8 1.0
O A:ARG14 4.0 25.9 1.0
N A:GLU15 4.0 25.5 1.0
CA A:GLU15 4.2 25.9 1.0
CZ A:ARG14 4.4 33.8 1.0
NE A:ARG14 4.5 31.3 1.0
CA A:ARG14 4.5 22.0 1.0
CB A:GLU15 4.6 30.4 1.0
CL A:CL201 5.0 30.3 1.0

Reference:

E.V.Filippova, S.Weigand, O.Kiryukhina, A.J.Wolfe, W.F.Anderson. Analysis of Crystalline and Solution States of Ligand-Free Spermidine N-Acetyltransferase (Speg) From Escherichia Coli. Acta Crystallogr D Struct V. 75 545 2019BIOL.
ISSN: ISSN 2059-7983
PubMed: 31205017
DOI: 10.1107/S2059798319006545
Page generated: Sat Jul 12 12:36:18 2025

Last articles

Cl in 8CHI
Cl in 8CGS
Cl in 8CGQ
Cl in 8CGP
Cl in 8CGK
Cl in 8CGD
Cl in 8CCT
Cl in 8CC7
Cl in 8CE6
Cl in 8CF0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy