Chlorine in PDB 6ebd: Ohrb (Organic Hydroperoxide Resistance Protein) Mutant (C60A) From Chromobacterium Violaceum, Interacting with Dihydrolipoamide

Protein crystallography data

The structure of Ohrb (Organic Hydroperoxide Resistance Protein) Mutant (C60A) From Chromobacterium Violaceum, Interacting with Dihydrolipoamide, PDB code: 6ebd was solved by R.M.Domingos, R.D.Teixeira, T.G.P.Alegria, P.S.Vieira, M.T.Murakami, L.E.S.Netto, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.00 / 2.61
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 87.675, 87.675, 179.609, 90.00, 90.00, 120.00
R / Rfree (%) 19.4 / 23.2

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Ohrb (Organic Hydroperoxide Resistance Protein) Mutant (C60A) From Chromobacterium Violaceum, Interacting with Dihydrolipoamide (pdb code 6ebd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Ohrb (Organic Hydroperoxide Resistance Protein) Mutant (C60A) From Chromobacterium Violaceum, Interacting with Dihydrolipoamide, PDB code: 6ebd:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 6ebd

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Chlorine binding site 1 out of 4 in the Ohrb (Organic Hydroperoxide Resistance Protein) Mutant (C60A) From Chromobacterium Violaceum, Interacting with Dihydrolipoamide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Ohrb (Organic Hydroperoxide Resistance Protein) Mutant (C60A) From Chromobacterium Violaceum, Interacting with Dihydrolipoamide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:75.3
occ:1.00
 O A:PRO106 2.6 90.8 1.0
N A:SER77 3.2 78.1 1.0
C A:LEU105 3.5 70.5 1.0
C A:PRO106 3.6 80.4 1.0
CA A:LEU105 3.6 66.6 1.0
N A:PRO106 3.7 76.1 1.0
O A:LEU105 3.8 70.6 1.0
CB A:SER77 3.8 82.9 1.0
CA A:LEU76 3.9 82.1 1.0
CD A:PRO106 4.0 74.4 1.0
CB A:LEU105 4.0 67.1 1.0
C A:LEU76 4.0 80.2 1.0
CA A:GLY107 4.1 84.2 1.0
CA A:SER77 4.1 79.4 1.0
CG A:LEU108 4.1 83.2 1.0
CB A:LEU76 4.2 79.7 1.0
CD2 A:LEU105 4.2 61.6 1.0
OG A:SER77 4.2 82.8 1.0
N A:GLY107 4.3 81.1 1.0
C A:GLY107 4.3 85.7 1.0
N A:LEU108 4.4 84.0 1.0
CA A:PRO106 4.4 79.0 1.0
CB A:ALA80 4.4 73.5 1.0
CD1 A:LEU108 4.5 80.7 1.0
CD2 A:LEU76 4.6 79.0 1.0
CG A:LEU105 4.8 62.3 1.0
O A:SER77 4.8 72.0 1.0
CB A:LEU108 4.8 80.9 1.0
CG A:PRO106 4.9 76.3 1.0
C A:SER77 5.0 78.0 1.0

Chlorine binding site 2 out of 4 in 6ebd

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Chlorine binding site 2 out of 4 in the Ohrb (Organic Hydroperoxide Resistance Protein) Mutant (C60A) From Chromobacterium Violaceum, Interacting with Dihydrolipoamide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Ohrb (Organic Hydroperoxide Resistance Protein) Mutant (C60A) From Chromobacterium Violaceum, Interacting with Dihydrolipoamide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl202

b:78.5
occ:1.00
 N B:GLY107 3.0 85.7 1.0
N B:SER77 3.2 67.7 1.0
CB B:SER77 3.4 67.2 1.0
C B:LEU105 3.5 67.3 1.0
CA B:GLY107 3.6 92.6 1.0
N B:PRO106 3.7 69.3 1.0
CA B:LEU105 3.7 63.4 1.0
OG B:SER77 3.9 71.2 1.0
C B:GLY107 3.9 97.2 1.0
O B:LEU105 3.9 69.6 1.0
CA B:SER77 3.9 66.5 1.0
CD B:PRO106 4.1 68.6 1.0
CB B:LEU105 4.1 62.5 1.0
C B:PRO106 4.1 80.5 1.0
CA B:LEU76 4.1 67.2 1.0
C B:LEU76 4.1 66.4 1.0
O B:GLY107 4.2 0.7 1.0
N B:LEU108 4.3 91.3 1.0
CD1 B:LEU108 4.3 86.0 1.0
CG B:PRO106 4.4 70.6 1.0
CA B:PRO106 4.4 74.6 1.0
CD2 B:LEU105 4.5 63.8 1.0
CB B:LEU76 4.5 64.9 1.0
CD2 B:LEU76 4.8 67.1 1.0
CD2 B:LEU108 4.8 79.7 1.0
CB B:ALA80 4.8 59.2 1.0
CB B:LEU108 4.8 85.4 1.0
CG B:LEU108 4.9 83.3 1.0
O B:SER77 4.9 57.3 1.0
CG B:LEU105 4.9 61.2 1.0
C B:SER77 5.0 62.7 1.0

Chlorine binding site 3 out of 4 in 6ebd

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Chlorine binding site 3 out of 4 in the Ohrb (Organic Hydroperoxide Resistance Protein) Mutant (C60A) From Chromobacterium Violaceum, Interacting with Dihydrolipoamide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Ohrb (Organic Hydroperoxide Resistance Protein) Mutant (C60A) From Chromobacterium Violaceum, Interacting with Dihydrolipoamide within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl202

b:77.7
occ:1.00
 O C:PRO106 2.9 0.8 1.0
N C:SER77 3.3 91.7 1.0
C C:LEU105 3.5 80.2 1.0
CA C:LEU105 3.6 74.6 1.0
N C:PRO106 3.8 87.8 1.0
C C:PRO106 3.8 91.8 1.0
O C:LEU105 3.8 79.0 1.0
CD2 C:LEU105 3.8 75.4 1.0
CB C:LEU105 3.9 74.8 1.0
CA C:LEU76 3.9 94.4 1.0
CB C:SER77 3.9 89.0 1.0
CG C:LEU108 4.0 79.0 1.0
CD C:PRO106 4.0 86.4 1.0
C C:LEU76 4.1 94.7 1.0
CB C:LEU76 4.2 89.9 1.0
CA C:SER77 4.2 89.9 1.0
C C:GLY107 4.2 93.7 1.0
OG C:SER77 4.3 83.8 1.0
N C:LEU108 4.3 88.6 1.0
CB C:ALA80 4.4 68.2 1.0
CD1 C:LEU108 4.4 76.1 1.0
CA C:GLY107 4.4 94.6 1.0
CG C:LEU105 4.5 73.7 1.0
CA C:PRO106 4.5 92.9 1.0
N C:GLY107 4.6 90.5 1.0
CD2 C:LEU76 4.6 91.9 1.0
CB C:LEU108 4.7 79.8 1.0
O C:GLY107 4.7 99.8 1.0
O C:SER77 4.7 80.9 1.0
CD2 C:LEU108 4.8 82.4 1.0
N C:LEU105 5.0 70.6 1.0
CG C:LEU76 5.0 88.7 1.0
C C:SER77 5.0 87.8 1.0

Chlorine binding site 4 out of 4 in 6ebd

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Chlorine binding site 4 out of 4 in the Ohrb (Organic Hydroperoxide Resistance Protein) Mutant (C60A) From Chromobacterium Violaceum, Interacting with Dihydrolipoamide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Ohrb (Organic Hydroperoxide Resistance Protein) Mutant (C60A) From Chromobacterium Violaceum, Interacting with Dihydrolipoamide within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl201

b:81.7
occ:1.00
 O D:PRO106 2.8 0.2 1.0
N D:SER77 3.4 73.2 1.0
C D:LEU105 3.4 90.2 1.0
CA D:LEU105 3.5 84.5 1.0
N D:PRO106 3.7 89.6 1.0
CB D:SER77 3.7 70.9 1.0
CD D:PRO106 3.8 83.2 1.0
O D:GLY107 3.8 0.8 1.0
C D:PRO106 3.8 99.4 1.0
CB D:LEU105 3.8 83.8 1.0
O D:LEU105 3.9 91.7 1.0
CG D:LEU108 4.0 0.4 1.0
CD2 D:LEU105 4.0 79.4 1.0
CA D:LEU76 4.1 71.5 1.0
CA D:SER77 4.2 71.0 1.0
C D:GLY107 4.2 0.8 1.0
C D:LEU76 4.3 71.5 1.0
CB D:LEU76 4.3 70.0 1.0
CD2 D:LEU76 4.4 76.2 1.0
CB D:LEU108 4.4 0.5 1.0
CD2 D:LEU108 4.4 0.6 1.0
OG D:SER77 4.4 74.0 1.0
CA D:PRO106 4.5 93.7 1.0
CG D:LEU105 4.6 79.6 1.0
CB D:ALA80 4.6 69.5 1.0
N D:LEU108 4.7 0.2 1.0
N D:GLY107 4.7 0.2 1.0
CA D:GLY107 4.8 0.5 1.0
O D:SER77 4.9 61.4 1.0
N D:LEU105 5.0 84.6 1.0
CG D:LEU76 5.0 71.9 1.0

Reference:

R.M.Domingos, R.D.Teixeira, T.G.P.Alegria, P.S.Vieira, M.T.Murakami, L.E.S.Netto. Ohrb (Organic Hydroperoxide Resistance Protein) Mutant (C60A) From Chromobacterium Violaceum, Interacting with Dihydrolipoamide and at 2.6 Angstroms Resolution To Be Published.
Page generated: Sat Dec 12 12:55:05 2020

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