Chlorine in PDB 6f2k: Crystal Structure of Hen Egg-White Lysozyme Co-Crystallized in Presence of 100 Mm Tb-XO4 and 100 Mm Potassium Phosphate Monobasic.

Enzymatic activity of Crystal Structure of Hen Egg-White Lysozyme Co-Crystallized in Presence of 100 Mm Tb-XO4 and 100 Mm Potassium Phosphate Monobasic.

All present enzymatic activity of Crystal Structure of Hen Egg-White Lysozyme Co-Crystallized in Presence of 100 Mm Tb-XO4 and 100 Mm Potassium Phosphate Monobasic.:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of Hen Egg-White Lysozyme Co-Crystallized in Presence of 100 Mm Tb-XO4 and 100 Mm Potassium Phosphate Monobasic., PDB code: 6f2k was solved by S.Engilberge, F.Riobe, S.Di Pietro, E.Girard, E.Dumont, O.Maury, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.04 / 1.50
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.359, 78.359, 37.404, 90.00, 90.00, 90.00
R / Rfree (%) 19.8 / 24

Other elements in 6f2k:

The structure of Crystal Structure of Hen Egg-White Lysozyme Co-Crystallized in Presence of 100 Mm Tb-XO4 and 100 Mm Potassium Phosphate Monobasic. also contains other interesting chemical elements:

Terbium (Tb) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Hen Egg-White Lysozyme Co-Crystallized in Presence of 100 Mm Tb-XO4 and 100 Mm Potassium Phosphate Monobasic. (pdb code 6f2k). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Hen Egg-White Lysozyme Co-Crystallized in Presence of 100 Mm Tb-XO4 and 100 Mm Potassium Phosphate Monobasic., PDB code: 6f2k:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 6f2k

Go back to Chlorine Binding Sites List in 6f2k
Chlorine binding site 1 out of 3 in the Crystal Structure of Hen Egg-White Lysozyme Co-Crystallized in Presence of 100 Mm Tb-XO4 and 100 Mm Potassium Phosphate Monobasic.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Hen Egg-White Lysozyme Co-Crystallized in Presence of 100 Mm Tb-XO4 and 100 Mm Potassium Phosphate Monobasic. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:34.7
occ:1.00
HD21 A:ASN65 2.1 23.0 1.0
HB3 A:PRO79 2.8 16.0 1.0
HB3 A:ASN65 2.8 16.5 1.0
HA A:PRO79 3.1 14.5 1.0
ND2 A:ASN65 3.1 22.3 1.0
O A:HOH428 3.2 22.9 1.0
CB A:PRO79 3.7 16.2 1.0
CA A:PRO79 3.7 14.6 1.0
HD22 A:ASN65 3.8 22.7 1.0
CB A:ASN65 3.8 17.9 1.0
CG A:ASN65 3.9 26.8 1.0
N A:PRO79 4.0 17.4 1.0
HD3 A:PRO79 4.1 19.1 1.0
O A:ASN65 4.2 17.1 1.0
HB2 A:ASN65 4.3 17.5 1.0
HD22 A:ASN74 4.4 22.2 1.0
HG3 A:PRO79 4.4 21.4 1.0
CG A:PRO79 4.4 21.8 1.0
CD A:PRO79 4.4 18.6 1.0
HB2 A:PRO79 4.5 16.1 1.0
C A:ILE78 4.5 20.2 1.0
H A:ASN65 4.7 14.1 1.0
O A:ILE78 4.7 19.4 1.0
C A:ASN65 4.8 16.6 1.0
HD21 A:ASN74 4.8 22.1 1.0
CA A:ASN65 4.8 15.2 1.0
ND2 A:ASN74 4.9 21.5 1.0
O A:HOH412 4.9 17.4 1.0

Chlorine binding site 2 out of 3 in 6f2k

Go back to Chlorine Binding Sites List in 6f2k
Chlorine binding site 2 out of 3 in the Crystal Structure of Hen Egg-White Lysozyme Co-Crystallized in Presence of 100 Mm Tb-XO4 and 100 Mm Potassium Phosphate Monobasic.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Hen Egg-White Lysozyme Co-Crystallized in Presence of 100 Mm Tb-XO4 and 100 Mm Potassium Phosphate Monobasic. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:22.8
occ:1.00
H A:THR69 2.2 14.9 1.0
HG A:SER72 2.9 23.6 1.0
O A:HOH450 3.0 32.0 1.0
O A:HOH378 3.1 17.7 1.0
O A:THR69 3.1 19.2 1.0
N A:THR69 3.2 15.3 1.0
H A:GLY67 3.2 15.9 1.0
HA2 A:GLY67 3.3 20.9 1.0
H A:ARG68 3.5 16.0 1.0
C A:THR69 3.5 20.0 1.0
HB A:THR69 3.5 17.9 1.0
N A:ARG68 3.6 17.1 1.0
OG A:SER72 3.6 23.4 1.0
C A:GLY67 3.6 23.2 1.0
O A:HOH381 3.7 35.8 1.0
CA A:GLY67 3.7 18.4 1.0
N A:GLY67 3.7 16.8 1.0
OD1 A:ASN65 3.7 21.2 1.0
CA A:THR69 3.8 16.6 1.0
O A:HOH382 4.0 24.2 1.0
O A:GLY67 4.1 23.9 1.0
H A:ASP66 4.1 13.6 1.0
CB A:THR69 4.2 17.4 1.0
C A:ARG68 4.2 19.8 1.0
OD1 A:ASP66 4.2 16.5 1.0
HA A:PRO70 4.3 21.8 1.0
CA A:ARG68 4.3 17.4 1.0
N A:PRO70 4.4 19.5 1.0
H A:SER72 4.4 23.8 1.0
HA A:ARG68 4.5 17.9 1.0
O A:HOH301 4.7 12.2 1.0
HA3 A:GLY67 4.8 16.6 1.0
OG1 A:THR69 4.8 15.3 1.0
C A:ASP66 4.8 19.3 1.0
HA A:ASN65 4.8 15.2 1.0
CA A:PRO70 4.8 20.9 1.0
HA A:THR69 4.9 14.9 1.0
CB A:SER72 4.9 21.6 1.0
N A:ASP66 4.9 14.1 1.0
CG A:ASN65 4.9 26.8 1.0
O A:HOH350 5.0 39.1 0.5

Chlorine binding site 3 out of 3 in 6f2k

Go back to Chlorine Binding Sites List in 6f2k
Chlorine binding site 3 out of 3 in the Crystal Structure of Hen Egg-White Lysozyme Co-Crystallized in Presence of 100 Mm Tb-XO4 and 100 Mm Potassium Phosphate Monobasic.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Hen Egg-White Lysozyme Co-Crystallized in Presence of 100 Mm Tb-XO4 and 100 Mm Potassium Phosphate Monobasic. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:23.1
occ:1.00
HH A:TYR23 2.0 15.5 1.0
OH A:TYR23 2.9 17.0 1.0
HE2 A:TYR23 3.0 16.3 1.0
O A:HOH419 3.1 33.3 1.0
HA3 A:GLY104 3.3 13.6 1.0
O A:HOH332 3.5 24.2 1.0
CZ A:TYR23 3.6 16.2 1.0
CE2 A:TYR23 3.6 15.2 1.0
CA A:GLY104 4.3 14.6 1.0
HA2 A:GLY104 4.3 16.8 1.0
HH21 A:ARG21 4.4 35.8 0.5
O A:ARG21 4.5 20.7 1.0
H A:MET105 4.6 16.3 1.0
HB3 A:ARG21 4.7 17.8 1.0
HE A:ARG21 4.7 37.2 0.5
CE1 A:TYR23 4.8 14.6 1.0
CD2 A:TYR23 4.8 14.7 1.0
N A:GLY104 4.9 15.1 1.0

Reference:

S.Engilberge, F.Riobe, T.Wagner, S.Di Pietro, C.Breyton, B.Franzetti, S.Shima, E.Girard, E.Dumont, O.Maury. Unveiling the Binding Modes of the Crystallophore, A Terbium-Based Nucleating and Phasing Molecular Agent For Protein Crystallography. Chemistry V. 24 9739 2018.
ISSN: ISSN 0947-6539
PubMed: 29806881
DOI: 10.1002/CHEM.201802172
Page generated: Sat Dec 12 12:57:36 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy