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Chlorine in PDB 6h0w: Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NS035

Protein crystallography data

The structure of Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NS035, PDB code: 6h0w was solved by P.H.Malecki, M.S.Weiss, U.Heinemann, A.Link, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.74 / 1.23
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 71.482, 71.482, 150.707, 90.00, 90.00, 90.00
R / Rfree (%) 12 / 13.6

Other elements in 6h0w:

The structure of Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NS035 also contains other interesting chemical elements:

Nickel (Ni) 1 atom
Zinc (Zn) 1 atom
Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NS035 (pdb code 6h0w). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NS035, PDB code: 6h0w:

Chlorine binding site 1 out of 1 in 6h0w

Go back to Chlorine Binding Sites List in 6h0w
Chlorine binding site 1 out of 1 in the Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NS035


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NS035 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl414

b:34.2
occ:1.00
O A:HOH829 3.2 52.8 1.0
NZ A:LYS186 3.4 16.9 1.0
ND2 A:ASN128 3.4 24.2 1.0
CE A:LYS186 3.8 14.8 1.0
CB A:ASN128 3.9 18.4 1.0
CZ2 A:TRP185 3.9 11.1 1.0
CG A:PRO113 4.0 18.1 1.0
NE1 A:TRP185 4.1 11.2 1.0
CG A:ASN128 4.1 22.2 1.0
CE2 A:TRP185 4.4 10.2 1.0
CB A:LYS124 4.4 13.2 1.0
O1 A:EDO406 4.4 24.4 1.0
O A:LYS124 4.5 12.7 1.0
CB A:PRO113 4.5 17.6 1.0
O2 A:EDO406 4.5 30.5 1.0
O A:HOH587 4.7 30.7 1.0
CD A:PRO113 4.7 16.1 1.0
C A:LYS124 4.9 11.6 1.0
C1 A:EDO406 4.9 26.9 1.0
O2 A:EDO403 5.0 45.3 1.0

Reference:

P.H.Malecki, M.S.Weiss, U.Heinemann, A.Link. Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NS035 To Be Published.
Page generated: Sat Dec 12 13:03:16 2020

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