Chlorine in PDB 6ig6: Crystal Structure of Lysozyme Delivered in Polyacrylamide Using X-Ray Free Electron Laser

All present enzymatic activity of Crystal Structure of Lysozyme Delivered in Polyacrylamide Using X-Ray Free Electron Laser:
3.2.1.17;

The structure of Crystal Structure of Lysozyme Delivered in Polyacrylamide Using X-Ray Free Electron Laser, PDB code: 6ig6 was solved by K.H.Nam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	26.04 / 1.70
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	79.600, 79.600, 38.200, 90.00, 90.00, 90.00
R / Rfree (%)	19.6 / 21.7

The structure of Crystal Structure of Lysozyme Delivered in Polyacrylamide Using X-Ray Free Electron Laser also contains other interesting chemical elements:

Sodium

(Na)

1 atom

The binding sites of Chlorine atom in the Crystal Structure of Lysozyme Delivered in Polyacrylamide Using X-Ray Free Electron Laser (pdb code 6ig6). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Lysozyme Delivered in Polyacrylamide Using X-Ray Free Electron Laser, PDB code: 6ig6:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of Lysozyme Delivered in Polyacrylamide Using X-Ray Free Electron Laser


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Lysozyme Delivered in Polyacrylamide Using X-Ray Free Electron Laser within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl202 b:42.5 occ:1.00 HH A:TYR23 2.3 38.5 1.0 OH A:TYR23 2.9 32.1 1.0 HE2 A:TYR23 3.2 38.0 1.0 HA3 A:GLY104 3.3 41.1 1.0 O A:HOH323 3.5 43.5 1.0 CZ A:TYR23 3.6 32.4 1.0 CE2 A:TYR23 3.7 31.6 1.0 HA2 A:GLY104 4.1 41.1 1.0 CA A:GLY104 4.1 34.2 1.0 N A:GLY104 4.7 32.2 1.0 O A:ARG21 4.7 37.5 1.0 H A:MET105 4.7 39.3 1.0 CE1 A:TYR23 4.8 33.8 1.0 H A:GLY104 4.9 38.7 1.0 CD2 A:TYR23 4.9 28.7 1.0 HB3 A:ARG21 5.0 63.8 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of Lysozyme Delivered in Polyacrylamide Using X-Ray Free Electron Laser


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Lysozyme Delivered in Polyacrylamide Using X-Ray Free Electron Laser within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl203 b:48.2 occ:1.00 H A:GLY26 2.3 39.3 1.0 HG A:SER24 2.7 49.0 1.0 HB2 A:SER24 2.8 50.5 1.0 HA A:GLN121 2.9 54.6 1.0 HA3 A:GLY26 2.9 40.4 1.0 OG A:SER24 3.0 40.8 1.0 N A:GLY26 3.1 32.7 1.0 HD11 A:ILE124 3.2 59.6 1.0 CB A:SER24 3.4 42.0 1.0 HG23 A:VAL120 3.5 45.9 1.0 CA A:GLY26 3.5 33.6 1.0 HD13 A:ILE124 3.5 59.6 1.0 HB2 A:GLN121 3.6 58.5 1.0 HG2 A:GLN121 3.6 66.1 1.0 CA A:GLN121 3.6 45.4 1.0 HG12 A:ILE124 3.7 44.4 1.0 CD1 A:ILE124 3.7 49.6 1.0 H A:LEU25 3.9 39.3 1.0 CB A:GLN121 3.9 48.7 1.0 N A:GLN121 4.0 39.6 1.0 N A:LEU25 4.0 32.7 1.0 HB3 A:SER24 4.1 50.5 1.0 HA2 A:GLY26 4.1 40.4 1.0 CG A:GLN121 4.1 55.1 1.0 C A:SER24 4.2 36.6 1.0 H A:ASN27 4.2 37.7 1.0 CG1 A:ILE124 4.3 36.9 1.0 C A:LEU25 4.3 31.5 1.0 HG3 A:GLN121 4.3 66.1 1.0 H A:GLN121 4.3 47.5 1.0 HB3 A:LEU25 4.3 43.9 1.0 O A:VAL120 4.3 37.9 1.0 C A:VAL120 4.4 35.8 1.0 CG2 A:VAL120 4.4 38.2 1.0 CA A:SER24 4.5 38.1 1.0 C A:GLY26 4.6 31.6 1.0 HD12 A:ILE124 4.6 59.6 1.0 CA A:LEU25 4.6 32.8 1.0 HG21 A:VAL120 4.7 45.9 1.0 O A:SER24 4.7 34.5 1.0 N A:ASN27 4.7 31.4 1.0 HG13 A:ILE124 4.7 44.4 1.0 HB3 A:GLN121 4.9 58.5 1.0 C A:GLN121 4.9 39.7 1.0 HG22 A:VAL120 4.9 45.9 1.0 HA A:SER24 4.9 45.8 1.0 HB A:VAL120 5.0 46.7 1.0 CB A:LEU25 5.0 36.6 1.0

J.Park, S.Park, J.Kim, G.Park, Y.Cho, K.H.Nam. Polyacrylamide Injection Matrix For Serial Femtosecond Crystallography. Sci Rep V. 9 2525 2019.
ISSN: ESSN 2045-2322
PubMed: 30792457
DOI: 10.1038/S41598-019-39020-9