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Chlorine in PDB 6njt: Mouse Endonuclease G Mutant - H97A

Protein crystallography data

The structure of Mouse Endonuclease G Mutant - H97A, PDB code: 6njt was solved by C.M.Vander Zanden, E.N.Ho, R.S.Czarny, A.B.Robertson, P.S.Ho, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.71 / 2.07
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 109.609, 109.609, 118.062, 90.00, 90.00, 120.00
R / Rfree (%) 18.4 / 21.3

Other elements in 6njt:

The structure of Mouse Endonuclease G Mutant - H97A also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Chlorine atom in the Mouse Endonuclease G Mutant - H97A (pdb code 6njt). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 11 binding sites of Chlorine where determined in the Mouse Endonuclease G Mutant - H97A, PDB code: 6njt:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 11 in 6njt

Go back to Chlorine Binding Sites List in 6njt
Chlorine binding site 1 out of 11 in the Mouse Endonuclease G Mutant - H97A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Mouse Endonuclease G Mutant - H97A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:37.0
occ:1.00
O A:HOH595 2.7 47.0 1.0
N A:GLU73 3.2 28.8 1.0
O A:HOH477 3.3 27.6 1.0
CA A:ARG72 3.6 27.2 0.6
CA A:ARG72 3.6 27.2 0.4
ND2 A:ASN85 3.6 27.1 1.0
CG A:GLU73 3.9 27.3 1.0
C A:ARG72 3.9 30.1 1.0
CD A:ARG72 4.0 22.0 0.6
CB A:ARG72 4.2 28.7 0.6
CB A:GLU73 4.2 26.8 1.0
CB A:ARG72 4.2 28.7 0.4
O A:PHE71 4.2 26.7 1.0
OE1 A:GLU73 4.2 35.2 1.0
CL A:CL307 4.3 72.0 1.0
CA A:GLU73 4.3 28.7 1.0
O A:HOH555 4.3 31.5 1.0
CD A:GLU73 4.4 32.4 1.0
CG A:ASN85 4.7 28.9 1.0
N A:ARG72 4.7 24.2 1.0
CG A:ARG72 4.7 31.0 0.6
C A:PHE71 4.9 27.5 1.0

Chlorine binding site 2 out of 11 in 6njt

Go back to Chlorine Binding Sites List in 6njt
Chlorine binding site 2 out of 11 in the Mouse Endonuclease G Mutant - H97A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Mouse Endonuclease G Mutant - H97A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:36.5
occ:1.00
N A:ARG95 3.1 21.8 1.0
O A:HOH543 3.2 26.2 1.0
NE A:ARG95 3.2 29.5 1.0
O A:HOH434 3.3 31.4 1.0
NH2 A:ARG95 3.6 32.3 1.0
CB A:ARG95 3.8 21.8 1.0
CA A:ASP94 3.8 20.9 1.0
CZ A:ARG95 3.8 33.2 1.0
C A:ASP94 4.0 29.4 1.0
CA A:ARG95 4.0 24.9 1.0
CB A:ASP94 4.1 21.7 1.0
OD1 A:ASP94 4.1 23.3 1.0
CG A:ARG95 4.2 21.5 1.0
CG A:ASP94 4.2 23.0 1.0
O A:HOH458 4.2 26.2 1.0
CE2 A:PHE71 4.2 17.4 1.0
CD A:ARG95 4.3 21.1 1.0
O A:ARG95 4.5 22.4 1.0
C A:ARG95 4.6 23.4 1.0
CD2 A:PHE71 4.7 27.8 1.0

Chlorine binding site 3 out of 11 in 6njt

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Chlorine binding site 3 out of 11 in the Mouse Endonuclease G Mutant - H97A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Mouse Endonuclease G Mutant - H97A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl304

b:26.1
occ:1.00
NZ B:LYS170 3.1 25.8 1.0
NZ A:LYS170 3.2 23.4 1.0
NH2 B:ARG160 3.6 28.7 1.0
NH2 A:ARG160 3.7 31.6 1.0
CD B:LYS170 3.8 19.9 1.0
CE B:LYS170 3.9 21.0 1.0
CD A:LYS170 4.1 24.0 1.0
CE A:LYS170 4.1 24.3 1.0
O A:HOH536 4.3 26.2 1.0
OE2 A:GLU162 4.5 23.0 1.0
OE2 B:GLU162 4.6 32.0 1.0
OE1 B:GLU162 4.8 27.1 1.0
O B:HOH593 4.8 57.9 1.0
OE1 A:GLU162 4.9 27.7 1.0
CZ B:ARG160 4.9 32.0 1.0
CZ A:ARG160 5.0 29.2 1.0

Chlorine binding site 4 out of 11 in 6njt

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Chlorine binding site 4 out of 11 in the Mouse Endonuclease G Mutant - H97A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Mouse Endonuclease G Mutant - H97A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl305

b:36.8
occ:1.00
O A:HOH563 2.9 33.2 1.0
O A:HOH498 3.2 21.7 1.0
N A:ALA102 3.2 18.3 1.0
CB A:ALA102 3.3 32.7 1.0
O A:HOH485 3.5 41.8 1.0
CA A:ALA102 3.8 28.0 1.0
N A:ALA101 3.9 22.9 1.0
CB A:ALA101 3.9 20.1 1.0
C A:ALA101 4.1 26.0 1.0
CA A:ALA101 4.2 26.7 1.0
CB A:ALA100 4.4 16.9 1.0
C A:ALA100 4.6 23.6 1.0
O A:HOH522 4.7 21.9 1.0
O A:HOH407 4.8 19.2 1.0
CA A:ALA100 4.9 21.3 1.0

Chlorine binding site 5 out of 11 in 6njt

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Chlorine binding site 5 out of 11 in the Mouse Endonuclease G Mutant - H97A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Mouse Endonuclease G Mutant - H97A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl306

b:57.6
occ:1.00
OG A:SER225 3.7 39.7 1.0
CB A:SER225 4.1 23.3 1.0
O A:SER225 4.2 27.4 1.0
CD1 A:LEU158 4.3 21.7 1.0
CG2 A:VAL204 4.4 20.8 1.0
C A:SER225 4.5 28.7 1.0
CG1 A:VAL204 4.7 15.7 1.0
O A:HOH453 4.8 37.4 1.0
CD1 A:LEU156 4.8 22.5 1.0
N A:ILE226 4.8 31.1 1.0
CB A:VAL204 4.9 23.9 1.0
CG1 A:VAL221 4.9 20.1 1.0
CG2 A:VAL221 4.9 22.1 1.0
CA A:SER225 5.0 29.9 1.0
CG1 A:ILE226 5.0 25.4 1.0

Chlorine binding site 6 out of 11 in 6njt

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Chlorine binding site 6 out of 11 in the Mouse Endonuclease G Mutant - H97A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Mouse Endonuclease G Mutant - H97A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl307

b:72.0
occ:1.00
OE1 A:GLU73 4.2 35.2 1.0
O A:HOH477 4.2 27.6 1.0
CL A:CL302 4.3 37.0 1.0
O A:HOH535 4.3 31.2 1.0
O A:HOH555 4.4 31.5 1.0
O A:HOH466 4.4 34.4 1.0
O A:HOH595 4.6 47.0 1.0
CD A:GLU73 4.8 32.4 1.0
O A:HOH570 4.9 32.3 1.0

Chlorine binding site 7 out of 11 in 6njt

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Chlorine binding site 7 out of 11 in the Mouse Endonuclease G Mutant - H97A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Mouse Endonuclease G Mutant - H97A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl308

b:71.7
occ:1.00
O B:HOH557 3.3 41.9 1.0
N A:LEU20 3.5 50.4 1.0
N A:GLU19 3.5 55.8 1.0
O B:HOH475 3.6 38.0 1.0
CB A:LEU20 3.7 28.8 1.0
O A:HOH461 4.0 48.1 1.0
O B:HOH573 4.1 46.0 1.0
CA A:LEU20 4.2 40.4 1.0
CA A:GLU19 4.4 52.7 1.0
C A:GLU19 4.5 44.8 1.0
O B:HOH512 4.8 30.9 1.0
CD2 A:LEU20 4.9 35.0 1.0
CG A:LEU20 4.9 37.7 1.0

Chlorine binding site 8 out of 11 in 6njt

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Chlorine binding site 8 out of 11 in the Mouse Endonuclease G Mutant - H97A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Mouse Endonuclease G Mutant - H97A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl302

b:34.2
occ:1.00
O B:HOH582 3.1 52.6 1.0
O B:HOH429 3.2 25.7 1.0
N B:GLU73 3.3 20.3 1.0
ND2 B:ASN85 3.6 27.2 1.0
CA B:ARG72 3.6 21.7 1.0
C B:ARG72 4.0 21.7 1.0
CG B:GLU73 4.0 24.8 1.0
O B:HOH602 4.0 39.8 1.0
CD B:ARG72 4.1 27.2 1.0
CB B:ARG72 4.2 24.1 1.0
CB B:GLU73 4.2 22.4 1.0
OE1 B:GLU73 4.2 24.5 1.0
CA B:GLU73 4.3 28.7 1.0
O B:PHE71 4.3 22.6 1.0
O B:HOH564 4.4 32.9 1.0
CD B:GLU73 4.5 28.8 1.0
CG B:ASN85 4.7 26.5 1.0
CG B:ARG72 4.8 25.0 1.0
N B:ARG72 4.8 22.2 1.0
O B:GLU73 4.9 28.8 1.0
C B:PHE71 5.0 28.0 1.0

Chlorine binding site 9 out of 11 in 6njt

Go back to Chlorine Binding Sites List in 6njt
Chlorine binding site 9 out of 11 in the Mouse Endonuclease G Mutant - H97A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Mouse Endonuclease G Mutant - H97A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl303

b:41.8
occ:1.00
O B:HOH601 3.0 38.3 1.0
O B:HOH532 3.1 22.4 1.0
N B:ALA102 3.2 24.5 1.0
O B:HOH420 3.4 37.7 1.0
CB B:ALA102 3.5 24.6 1.0
CB B:ALA101 3.9 19.9 1.0
N B:ALA101 3.9 25.1 1.0
CA B:ALA102 3.9 27.7 1.0
C B:ALA101 4.1 25.7 1.0
CA B:ALA101 4.2 28.2 1.0
O B:HOH405 4.5 40.8 1.0
CB B:ALA100 4.6 24.0 1.0
O B:HOH550 4.6 22.7 1.0
C B:ALA100 4.6 25.9 1.0
O B:HOH422 4.8 21.9 1.0
CA B:ALA100 4.9 21.7 1.0
O B:HOH618 5.0 21.7 1.0

Chlorine binding site 10 out of 11 in 6njt

Go back to Chlorine Binding Sites List in 6njt
Chlorine binding site 10 out of 11 in the Mouse Endonuclease G Mutant - H97A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Mouse Endonuclease G Mutant - H97A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl304

b:40.2
occ:1.00
N B:ARG95 3.2 20.1 1.0
O B:HOH494 3.3 26.7 1.0
O B:HOH533 3.3 27.4 1.0
NE B:ARG95 3.3 21.4 1.0
NH2 B:ARG95 3.5 32.5 1.0
CA B:ASP94 3.7 19.9 1.0
CZ B:ARG95 3.9 31.7 1.0
CB B:ASP94 3.9 23.6 1.0
OD1 B:ASP94 4.0 23.1 1.0
C B:ASP94 4.0 28.0 1.0
CB B:ARG95 4.0 19.2 1.0
CG B:ASP94 4.1 25.6 1.0
CA B:ARG95 4.1 21.4 1.0
O B:HOH476 4.2 26.2 1.0
CE2 B:PHE71 4.3 26.0 1.0
CG B:ARG95 4.4 19.6 1.0
CD B:ARG95 4.4 23.1 1.0
O B:ARG95 4.6 22.8 1.0
C B:ARG95 4.7 24.4 1.0
CD2 B:PHE71 4.9 23.8 1.0
OD2 B:ASP94 4.9 24.7 1.0
O B:PHE93 5.0 22.2 1.0

Reference:

C.M.Vander Zanden, E.N.Ho, R.S.Czarny, A.B.Robertson, P.S.Ho. Structural Adaptation of Vertebrate Endonuclease G For 5-Hydroxymethylcytosine Recognition and Function To Be Published.
Page generated: Mon Jul 29 12:03:11 2024

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