Chlorine in PDB 6p4d: Hen Egg Lysozyme (Hel) Containing Three Point Mutations (HEL3X): R21Q, R73E, and D101R

Enzymatic activity of Hen Egg Lysozyme (Hel) Containing Three Point Mutations (HEL3X): R21Q, R73E, and D101R

All present enzymatic activity of Hen Egg Lysozyme (Hel) Containing Three Point Mutations (HEL3X): R21Q, R73E, and D101R:
3.2.1.17;

Protein crystallography data

The structure of Hen Egg Lysozyme (Hel) Containing Three Point Mutations (HEL3X): R21Q, R73E, and D101R, PDB code: 6p4d was solved by D.B.Langley, D.Christ, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.77 / 1.05
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.550, 77.550, 37.770, 90.00, 90.00, 90.00
R / Rfree (%) 12.2 / 14.5

Other elements in 6p4d:

The structure of Hen Egg Lysozyme (Hel) Containing Three Point Mutations (HEL3X): R21Q, R73E, and D101R also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Hen Egg Lysozyme (Hel) Containing Three Point Mutations (HEL3X): R21Q, R73E, and D101R (pdb code 6p4d). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Hen Egg Lysozyme (Hel) Containing Three Point Mutations (HEL3X): R21Q, R73E, and D101R, PDB code: 6p4d:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 6p4d

Go back to Chlorine Binding Sites List in 6p4d
Chlorine binding site 1 out of 4 in the Hen Egg Lysozyme (Hel) Containing Three Point Mutations (HEL3X): R21Q, R73E, and D101R


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Hen Egg Lysozyme (Hel) Containing Three Point Mutations (HEL3X): R21Q, R73E, and D101R within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:15.9
occ:1.00
O A:HOH429 2.8 43.8 1.0
OG A:SER24 3.0 14.3 1.0
N A:GLY26 3.2 8.7 1.0
O A:HOH449 3.2 40.8 1.0
CB A:SER24 3.5 11.2 1.0
CA A:GLY26 3.6 8.7 1.0
CA A:GLN121 3.6 13.3 1.0
CB A:GLN121 3.9 16.2 1.0
N A:GLN121 3.9 12.3 1.0
CD1 A:ILE124 4.0 21.4 1.0
CG A:GLN121 4.1 19.2 1.0
N A:LEU25 4.2 9.2 1.0
C A:VAL120 4.3 11.5 1.0
C A:SER24 4.3 9.3 1.0
CG2 A:VAL120 4.4 12.9 1.0
C A:LEU25 4.4 8.4 1.0
CG1 A:ILE124 4.4 17.9 1.0
O A:VAL120 4.4 11.3 1.0
CA A:SER24 4.6 9.7 1.0
C A:GLY26 4.6 7.9 1.0
N A:ASN27 4.7 7.9 1.0
CA A:LEU25 4.7 9.2 1.0
O A:SER24 4.8 9.6 1.0
C A:GLN121 4.8 12.8 1.0
O A:HOH422 4.8 29.1 1.0
O A:HOH303 5.0 12.2 0.5

Chlorine binding site 2 out of 4 in 6p4d

Go back to Chlorine Binding Sites List in 6p4d
Chlorine binding site 2 out of 4 in the Hen Egg Lysozyme (Hel) Containing Three Point Mutations (HEL3X): R21Q, R73E, and D101R


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Hen Egg Lysozyme (Hel) Containing Three Point Mutations (HEL3X): R21Q, R73E, and D101R within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:21.4
occ:0.50
O A:HOH346 2.1 37.4 1.0
O A:HOH435 2.8 27.9 1.0
O A:HOH312 3.2 17.6 0.5
N A:ILE88 3.4 10.0 1.0
CG1 A:ILE88 3.6 11.3 1.0
NH1 A:ARG14 3.7 19.8 1.0
O A:HOH349 3.8 31.3 1.0
CA A:ASP87 4.0 11.9 1.0
NE2 A:HIS15 4.0 16.4 1.0
OD1 A:ASP87 4.1 14.5 1.0
O A:SER86 4.1 15.3 1.0
C A:ASP87 4.1 10.8 1.0
CB A:ALA11 4.2 11.2 1.0
CB A:ILE88 4.3 10.1 1.0
CZ A:PHE3 4.3 11.5 1.0
CA A:ILE88 4.3 9.4 1.0
CG2 A:ILE88 4.3 12.0 1.0
CD2 A:HIS15 4.5 15.5 1.0
CD1 A:ILE88 4.5 12.4 1.0
CG A:ASP87 4.8 15.4 1.0
CE2 A:PHE3 4.8 10.9 1.0
CB A:ASP87 4.9 13.6 1.0
CZ A:ARG14 4.9 16.9 1.0
N A:ASP87 4.9 11.2 1.0
C A:SER86 4.9 12.0 1.0
N A:THR89 5.0 9.6 1.0

Chlorine binding site 3 out of 4 in 6p4d

Go back to Chlorine Binding Sites List in 6p4d
Chlorine binding site 3 out of 4 in the Hen Egg Lysozyme (Hel) Containing Three Point Mutations (HEL3X): R21Q, R73E, and D101R


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Hen Egg Lysozyme (Hel) Containing Three Point Mutations (HEL3X): R21Q, R73E, and D101R within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:28.7
occ:0.50
CE2 A:PHE38 3.6 11.2 1.0
NZ A:LYS33 3.8 20.6 1.0
CZ3 A:TRP123 4.0 16.9 1.0
CE A:LYS33 4.2 17.3 1.0
CD A:ARG5 4.2 12.6 1.0
CD A:LYS33 4.3 12.9 1.0
CZ A:PHE38 4.3 9.7 1.0
CB A:ARG5 4.4 11.1 1.0
CD2 A:PHE38 4.5 10.1 1.0
O A:HOH424 4.5 32.8 1.0
CG A:ARG5 4.7 11.5 1.0
NE A:ARG5 4.8 13.6 1.0
CE3 A:TRP123 4.8 13.8 1.0
O A:HOH366 4.8 43.3 1.0
CH2 A:TRP123 4.9 17.2 1.0
O A:HOH409 4.9 23.7 1.0

Chlorine binding site 4 out of 4 in 6p4d

Go back to Chlorine Binding Sites List in 6p4d
Chlorine binding site 4 out of 4 in the Hen Egg Lysozyme (Hel) Containing Three Point Mutations (HEL3X): R21Q, R73E, and D101R


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Hen Egg Lysozyme (Hel) Containing Three Point Mutations (HEL3X): R21Q, R73E, and D101R within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:22.3
occ:1.00
O A:HOH437 2.8 40.7 1.0
O A:HOH423 2.8 16.5 1.0
N A:GLU7 3.1 9.8 1.0
CA A:GLY4 3.5 10.1 1.0
N A:CYS6 3.5 10.7 1.0
C A:GLY4 3.6 9.5 1.0
CB A:GLU7 3.6 10.3 1.0
N A:ARG5 3.8 10.3 1.0
CB A:CYS6 3.9 14.0 1.0
CA A:CYS6 3.9 11.3 1.0
C A:CYS6 3.9 10.4 1.0
CA A:GLU7 4.0 10.0 1.0
O A:GLY4 4.1 9.7 1.0
O A:HOH409 4.4 23.7 1.0
C A:ARG5 4.4 9.9 1.0
O A:HOH462 4.4 34.2 1.0
N A:GLY4 4.5 9.9 1.0
CA A:ARG5 4.7 10.1 1.0
CG A:GLU7 4.9 11.0 1.0
OE1 A:GLU7 5.0 12.5 1.0

Reference:

D.B.Langley, D.Christ. Resolution of Self-Reactivity Upon Vaccination with A Conformationally Flexible Antigen. To Be Published.
Page generated: Sat Dec 12 13:28:48 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy