Chlorine in PDB 7ktn: Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 10 Mm MG2+ (2160MIN)

Enzymatic activity of Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 10 Mm MG2+ (2160MIN)

All present enzymatic activity of Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 10 Mm MG2+ (2160MIN):
2.7.7.7;

Protein crystallography data

The structure of Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 10 Mm MG2+ (2160MIN), PDB code: 7ktn was solved by J.A.Jamsen, S.H.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	35.09 / 1.33
*Space group*	P 2₁ 2₁ 2₁
*Cell size a, b, c (Å), α, β, γ (°)*	60.229, 68.293, 111.412, 90, 90, 90
*R / R_free (%)*	14.1 / 16.3

Other elements in 7ktn:

The structure of Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 10 Mm MG2+ (2160MIN) also contains other interesting chemical elements:

Magnesium	(Mg)	1 atom
Sodium	(Na)	2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 10 Mm MG2+ (2160MIN) (pdb code 7ktn). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 10 Mm MG2+ (2160MIN), PDB code: 7ktn:

Chlorine binding site 1 out of 1 in 7ktn

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Chlorine Binding Sites List in 7ktn

Chlorine binding site 1 out of 1 in the Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 10 Mm MG2+ (2160MIN)

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 10 Mm MG2+ (2160MIN) within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Cl504 b:27.9 occ:0.62	OG	A:SER172	2.2	29.1	0.4
	O	A:HOH740	2.8	38.8	1.0
	N	A:ARG175	3.3	16.3	1.0
	CB	A:SER172	3.3	27.0	0.4
	N	A:GLY174	3.3	17.6	1.0
	C	A:SER172	3.3	19.4	0.6
	CA	A:SER172	3.4	23.6	0.4
	CA	A:SER172	3.4	21.4	0.6
	CB	A:SER172	3.4	23.8	0.6
	C	A:SER172	3.4	21.5	0.4
	NH1	A:ARG175	3.5	40.6	1.0
	CG	A:ARG175	3.6	21.1	1.0
	O	A:SER172	3.6	19.7	0.6
	N	A:GLU173	3.7	19.5	0.4
	CA	A:GLY174	3.7	17.6	1.0
	N	A:GLU173	3.8	21.4	0.6
	O	A:SER172	3.8	21.1	0.4
	C	A:GLY174	4.0	16.6	1.0
	CB	A:ARG175	4.0	17.6	1.0
	CD	A:ARG175	4.1	27.2	1.0
	CA	A:ARG175	4.3	16.0	1.0
	C	A:GLU173	4.3	17.6	0.4
	OG	A:SER172	4.3	25.3	0.6
	C	A:GLU173	4.3	18.3	0.6
	O6	D:DG1	4.4	18.0	1.0
	O	A:HOH796	4.5	37.4	1.0
	CZ	A:ARG175	4.5	38.1	1.0
	CA	A:GLU173	4.6	19.2	0.4
	C6	D:DG1	4.7	16.6	1.0
	CA	A:GLU173	4.7	21.1	0.6
	NE	A:ARG175	4.8	34.0	1.0
	N	A:SER172	4.8	23.1	0.4
	N	A:SER172	4.8	21.6	0.6
	N7	D:DG1	4.9	18.9	1.0
	C5	D:DG1	4.9	16.4	1.0

Reference:

J.A.Jamsen, A.Sassa, D.D.Shock, W.A.Beard, S.H.Wilson. Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 10 Mm MG2+ (2160MIN) To Be Published.

Page generated: Fri Dec 17 08:51:27 2021

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