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Chlorine in PDB 7ktn: Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 10 Mm MG2+ (2160MIN)

Enzymatic activity of Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 10 Mm MG2+ (2160MIN)

All present enzymatic activity of Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 10 Mm MG2+ (2160MIN):
2.7.7.7;

Protein crystallography data

The structure of Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 10 Mm MG2+ (2160MIN), PDB code: 7ktn was solved by J.A.Jamsen, S.H.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.09 / 1.33
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 60.229, 68.293, 111.412, 90, 90, 90
R / Rfree (%) 14.1 / 16.3

Other elements in 7ktn:

The structure of Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 10 Mm MG2+ (2160MIN) also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 10 Mm MG2+ (2160MIN) (pdb code 7ktn). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 10 Mm MG2+ (2160MIN), PDB code: 7ktn:

Chlorine binding site 1 out of 1 in 7ktn

Go back to Chlorine Binding Sites List in 7ktn
Chlorine binding site 1 out of 1 in the Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 10 Mm MG2+ (2160MIN)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 10 Mm MG2+ (2160MIN) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl504

b:27.9
occ:0.62
 OG A:SER172 2.2 29.1 0.4
O A:HOH740 2.8 38.8 1.0
N A:ARG175 3.3 16.3 1.0
CB A:SER172 3.3 27.0 0.4
N A:GLY174 3.3 17.6 1.0
C A:SER172 3.3 19.4 0.6
CA A:SER172 3.4 23.6 0.4
CA A:SER172 3.4 21.4 0.6
CB A:SER172 3.4 23.8 0.6
C A:SER172 3.4 21.5 0.4
NH1 A:ARG175 3.5 40.6 1.0
CG A:ARG175 3.6 21.1 1.0
O A:SER172 3.6 19.7 0.6
N A:GLU173 3.7 19.5 0.4
CA A:GLY174 3.7 17.6 1.0
N A:GLU173 3.8 21.4 0.6
O A:SER172 3.8 21.1 0.4
C A:GLY174 4.0 16.6 1.0
CB A:ARG175 4.0 17.6 1.0
CD A:ARG175 4.1 27.2 1.0
CA A:ARG175 4.3 16.0 1.0
C A:GLU173 4.3 17.6 0.4
OG A:SER172 4.3 25.3 0.6
C A:GLU173 4.3 18.3 0.6
O6 D:DG1 4.4 18.0 1.0
O A:HOH796 4.5 37.4 1.0
CZ A:ARG175 4.5 38.1 1.0
CA A:GLU173 4.6 19.2 0.4
C6 D:DG1 4.7 16.6 1.0
CA A:GLU173 4.7 21.1 0.6
NE A:ARG175 4.8 34.0 1.0
N A:SER172 4.8 23.1 0.4
N A:SER172 4.8 21.6 0.6
N7 D:DG1 4.9 18.9 1.0
C5 D:DG1 4.9 16.4 1.0

Reference:

J.A.Jamsen, A.Sassa, D.D.Shock, W.A.Beard, S.H.Wilson. Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 10 Mm MG2+ (2160MIN) To Be Published.
Page generated: Mon Jul 29 23:45:41 2024

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