Chlorine in PDB 8h0i: Cryo-Em Structure of APOBEC3G-Vif Complex

The structure of Cryo-Em Structure of APOBEC3G-Vif Complex also contains other interesting chemical elements:

Zinc

(Zn)

4 atoms

The binding sites of Chlorine atom in the Cryo-Em Structure of APOBEC3G-Vif Complex (pdb code 8h0i). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Cryo-Em Structure of APOBEC3G-Vif Complex, PDB code: 8h0i:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Cryo-Em Structure of APOBEC3G-Vif Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Cryo-Em Structure of APOBEC3G-Vif Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl403 b:35.6 occ:1.00 ZN A:ZN401 2.3 57.5 1.0 OE2 A:GLU55 3.0 22.6 1.0 OE1 A:GLU55 3.2 22.6 1.0 CD A:GLU55 3.5 22.6 1.0 ND1 A:HIS53 3.5 28.9 1.0 N A:CYS84 3.9 28.5 1.0 SG A:CYS87 3.9 29.6 1.0 CA A:PRO83 3.9 20.1 1.0 CG A:HIS53 4.0 28.9 1.0 CB A:HIS53 4.1 28.9 1.0 CE1 A:HIS53 4.2 28.9 1.0 SG A:CYS84 4.3 28.5 1.0 CB A:CYS87 4.4 29.6 1.0 C A:PRO83 4.4 20.1 1.0 O A:SER82 4.5 15.7 1.0 CG2 A:VAL22 4.6 22.9 1.0 CG1 A:VAL22 4.6 22.9 1.0 CB A:CYS84 4.7 28.5 1.0 CB A:PRO83 4.7 20.1 1.0 N4 X:C9 4.8 60.1 1.0 CD2 A:HIS53 4.8 28.9 1.0 N A:PRO83 4.8 20.1 1.0 CD A:PRO54 4.9 22.3 1.0 NE2 A:HIS53 4.9 28.9 1.0 CA A:CYS84 4.9 28.5 1.0 CG A:GLU55 4.9 22.6 1.0 CB A:VAL22 5.0 22.9 1.0 C A:SER82 5.0 15.7 1.0

Chlorine binding site 2 out of 2 in the Cryo-Em Structure of APOBEC3G-Vif Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Cryo-Em Structure of APOBEC3G-Vif Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl403 b:36.6 occ:1.00 ZN B:ZN401 2.3 58.5 1.0 OE2 B:GLU55 3.1 22.4 1.0 OE1 B:GLU55 3.3 22.4 1.0 CD B:GLU55 3.6 22.4 1.0 ND1 B:HIS53 3.6 28.8 1.0 N B:CYS84 3.7 28.9 1.0 CA B:PRO83 3.8 19.4 1.0 SG B:CYS87 4.0 29.5 1.0 CG B:HIS53 4.1 28.8 1.0 SG B:CYS84 4.2 28.9 1.0 C B:PRO83 4.3 19.4 1.0 CB B:HIS53 4.3 28.8 1.0 CE1 B:HIS53 4.3 28.8 1.0 O B:SER82 4.3 16.1 1.0 CB B:CYS87 4.4 29.5 1.0 CB B:CYS84 4.6 28.9 1.0 CB B:PRO83 4.6 19.4 1.0 CG2 B:VAL22 4.6 22.6 1.0 N B:PRO83 4.6 19.4 1.0 CG1 B:VAL22 4.7 22.6 1.0 N4 Y:C9 4.8 60.2 1.0 CA B:CYS84 4.8 28.9 1.0 C B:SER82 4.8 16.1 1.0 CD2 B:HIS53 4.9 28.8 1.0 CG B:GLU55 5.0 22.4 1.0

T.Kouno, S.Shibata, M.Shigematsu, J.Hyun, T.G.Kim, H.Matsuo, M.Wolf. Structural Insights Into Rna Bridging Between Hiv-1 Vif and Antiviral Factor APOBEC3G. Nat Commun V. 14 4037 2023.
ISSN: ESSN 2041-1723
PubMed: 37419875
DOI: 10.1038/S41467-023-39796-5