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Chlorine in PDB 8rja: Crystal Structure of the F420-Reducing Formylmethanofuran Dehydrogenase Complex From the Ethanotroph Candidatus Ethanoperedens Thermophilum

Enzymatic activity of Crystal Structure of the F420-Reducing Formylmethanofuran Dehydrogenase Complex From the Ethanotroph Candidatus Ethanoperedens Thermophilum

All present enzymatic activity of Crystal Structure of the F420-Reducing Formylmethanofuran Dehydrogenase Complex From the Ethanotroph Candidatus Ethanoperedens Thermophilum:
1.2.7.12; 1.6.5.11; 3.5.2.5;

Protein crystallography data

The structure of Crystal Structure of the F420-Reducing Formylmethanofuran Dehydrogenase Complex From the Ethanotroph Candidatus Ethanoperedens Thermophilum, PDB code: 8rja was solved by O.N.Lemaire, T.Wagner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 57.38 / 1.97
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 107.627, 135.636, 149.902, 90, 90.49, 90
R / Rfree (%) 17.6 / 21

Other elements in 8rja:

The structure of Crystal Structure of the F420-Reducing Formylmethanofuran Dehydrogenase Complex From the Ethanotroph Candidatus Ethanoperedens Thermophilum also contains other interesting chemical elements:

Sodium (Na) 4 atoms
Iron (Fe) 48 atoms
Zinc (Zn) 4 atoms
Tungsten (W) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the F420-Reducing Formylmethanofuran Dehydrogenase Complex From the Ethanotroph Candidatus Ethanoperedens Thermophilum (pdb code 8rja). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of the F420-Reducing Formylmethanofuran Dehydrogenase Complex From the Ethanotroph Candidatus Ethanoperedens Thermophilum, PDB code: 8rja:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 8rja

Go back to Chlorine Binding Sites List in 8rja
Chlorine binding site 1 out of 4 in the Crystal Structure of the F420-Reducing Formylmethanofuran Dehydrogenase Complex From the Ethanotroph Candidatus Ethanoperedens Thermophilum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the F420-Reducing Formylmethanofuran Dehydrogenase Complex From the Ethanotroph Candidatus Ethanoperedens Thermophilum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl612

b:61.5
occ:1.00
NH1 A:ARG514 3.4 24.2 1.0
OD1 A:ASP462 4.2 26.1 1.0
O A:HOH883 4.3 31.0 1.0
CZ A:ARG514 4.4 20.9 1.0
OD2 A:ASP462 4.5 23.6 1.0
CG1 A:VAL560 4.5 15.7 1.0
O A:TYR452 4.5 23.7 1.0
O A:HOH793 4.6 23.4 1.0
NH2 A:ARG514 4.6 28.1 1.0
NZ A:LYS31 4.7 43.5 1.0
CG A:ASP462 4.8 22.9 1.0
CG2 A:VAL560 4.8 17.4 1.0
CE A:LYS31 4.9 36.5 1.0

Chlorine binding site 2 out of 4 in 8rja

Go back to Chlorine Binding Sites List in 8rja
Chlorine binding site 2 out of 4 in the Crystal Structure of the F420-Reducing Formylmethanofuran Dehydrogenase Complex From the Ethanotroph Candidatus Ethanoperedens Thermophilum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the F420-Reducing Formylmethanofuran Dehydrogenase Complex From the Ethanotroph Candidatus Ethanoperedens Thermophilum within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl301

b:62.6
occ:1.00
NH1 C:ARG106 3.4 57.1 1.0
CG1 C:ILE87 3.6 30.0 1.0
CD1 C:ILE87 3.8 33.3 1.0
O C:GLY86 4.0 29.6 1.0
CB C:ARG106 4.4 29.2 1.0
CZ C:ARG106 4.4 54.7 1.0
N C:ARG106 4.5 27.9 1.0
C C:GLY86 4.6 33.0 1.0
C C:GLY105 4.7 25.0 1.0
CA C:GLY105 4.7 27.5 1.0
NH2 C:ARG106 4.9 50.3 1.0

Chlorine binding site 3 out of 4 in 8rja

Go back to Chlorine Binding Sites List in 8rja
Chlorine binding site 3 out of 4 in the Crystal Structure of the F420-Reducing Formylmethanofuran Dehydrogenase Complex From the Ethanotroph Candidatus Ethanoperedens Thermophilum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of the F420-Reducing Formylmethanofuran Dehydrogenase Complex From the Ethanotroph Candidatus Ethanoperedens Thermophilum within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl103

b:31.3
occ:1.00
O F:HOH253 2.8 24.5 1.0
N F:VAL12 3.7 27.5 1.0
CD F:LYS11 3.8 53.8 1.0
N F:VAL56 4.1 29.1 1.0
CA F:LYS11 4.2 31.4 1.0
CB F:VAL12 4.4 27.0 1.0
C F:LYS11 4.4 28.0 1.0
CA F:ALA55 4.4 21.8 1.0
O F:VAL12 4.5 25.4 1.0
CA F:VAL12 4.5 24.8 1.0
CB F:LYS11 4.5 34.2 1.0
CG2 F:VAL12 4.7 24.4 1.0
CG F:LYS11 4.7 41.8 1.0
CB F:VAL56 4.8 28.0 1.0
C F:ALA55 4.8 25.4 1.0
CG2 F:VAL56 4.8 24.2 1.0
O F:ALA54 4.8 22.6 1.0
CE F:LYS11 4.8 63.9 1.0
O F:VAL10 5.0 27.7 1.0
CA F:VAL56 5.0 24.1 1.0
CB F:ALA55 5.0 26.7 1.0

Chlorine binding site 4 out of 4 in 8rja

Go back to Chlorine Binding Sites List in 8rja
Chlorine binding site 4 out of 4 in the Crystal Structure of the F420-Reducing Formylmethanofuran Dehydrogenase Complex From the Ethanotroph Candidatus Ethanoperedens Thermophilum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of the F420-Reducing Formylmethanofuran Dehydrogenase Complex From the Ethanotroph Candidatus Ethanoperedens Thermophilum within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Cl103

b:26.1
occ:1.00
N L:VAL12 3.9 27.0 1.0
N L:VAL56 4.0 22.6 1.0
CG L:LYS11 4.1 34.4 1.0
CA L:LYS11 4.4 27.6 1.0
CA L:ALA55 4.4 21.1 1.0
CB L:VAL12 4.5 22.8 1.0
CB L:LYS11 4.6 29.6 1.0
O L:VAL12 4.6 26.4 1.0
C L:LYS11 4.6 25.8 1.0
C L:ALA55 4.7 20.7 1.0
CA L:VAL12 4.7 23.9 1.0
CB L:VAL56 4.7 20.9 1.0
CG2 L:VAL12 4.8 22.0 1.0
CG2 L:VAL56 4.9 24.7 1.0
O L:ALA54 4.9 21.2 1.0
CB L:ALA55 4.9 22.0 1.0
CA L:VAL56 4.9 20.7 1.0
O L:VAL56 5.0 25.0 1.0

Reference:

O.N.Lemaire, G.Wegener, T.Wagner. F420 Reduction As A Cellular Driver For Anaerobic Ethanotrophy To Be Published.
Page generated: Thu Oct 31 18:01:02 2024

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