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Chlorine in PDB 2od4: Crystal Structure of A Dimeric Ferredoxin-Like Protein (JCVI_PEP_1096665735785) From Uncultured Marine Organism at 1.70 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Dimeric Ferredoxin-Like Protein (JCVI_PEP_1096665735785) From Uncultured Marine Organism at 1.70 A Resolution, PDB code: 2od4 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.89 / 1.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 31.890, 77.790, 43.810, 90.00, 102.66, 90.00
R / Rfree (%) 15.9 / 19.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Dimeric Ferredoxin-Like Protein (JCVI_PEP_1096665735785) From Uncultured Marine Organism at 1.70 A Resolution (pdb code 2od4). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of A Dimeric Ferredoxin-Like Protein (JCVI_PEP_1096665735785) From Uncultured Marine Organism at 1.70 A Resolution, PDB code: 2od4:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 2od4

Go back to Chlorine Binding Sites List in 2od4
Chlorine binding site 1 out of 4 in the Crystal Structure of A Dimeric Ferredoxin-Like Protein (JCVI_PEP_1096665735785) From Uncultured Marine Organism at 1.70 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Dimeric Ferredoxin-Like Protein (JCVI_PEP_1096665735785) From Uncultured Marine Organism at 1.70 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl101

b:27.5
occ:1.00
O1 A:EDO103 2.8 27.3 1.0
OH A:TYR62 2.9 24.9 1.0
O2 A:EDO103 3.1 28.1 1.0
NH1 A:ARG11 3.1 23.5 1.0
CD A:ARG11 3.6 22.4 1.0
CE2 A:TYR62 3.8 21.2 1.0
CZ A:TYR62 3.8 20.5 1.0
C1 A:EDO103 3.8 27.0 1.0
CD1 A:ILE60 3.8 24.6 1.0
C2 A:EDO103 4.0 28.6 1.0
CG1 A:ILE60 4.2 22.4 1.0
CZ A:ARG11 4.2 24.0 1.0
NE A:ARG11 4.3 26.3 1.0
CD1 A:ILE75 4.4 28.9 1.0
CB A:ILE60 4.5 20.0 1.0
CG1 A:VAL38 4.5 20.0 1.0
CG1 A:VAL71 4.5 19.8 1.0
CG2 A:ILE60 4.6 20.4 1.0
CG A:ARG11 4.6 22.6 1.0
CB A:ARG11 4.8 22.0 1.0
CD1 A:PHE72 4.9 29.8 1.0
CB A:VAL38 4.9 21.2 1.0

Chlorine binding site 2 out of 4 in 2od4

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Chlorine binding site 2 out of 4 in the Crystal Structure of A Dimeric Ferredoxin-Like Protein (JCVI_PEP_1096665735785) From Uncultured Marine Organism at 1.70 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Dimeric Ferredoxin-Like Protein (JCVI_PEP_1096665735785) From Uncultured Marine Organism at 1.70 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl102

b:31.9
occ:1.00
N A:ILE90 3.2 21.5 1.0
NH2 A:ARG83 3.3 33.0 1.0
OE1 A:GLN89 3.5 52.0 1.0
NH1 A:ARG83 3.6 37.5 1.0
CD A:GLN89 3.7 43.1 1.0
CA A:GLN89 3.7 21.9 1.0
NE2 A:GLN89 3.7 52.6 1.0
CZ A:ARG83 3.9 32.3 1.0
C A:GLN89 4.0 22.6 1.0
O A:ILE88 4.1 23.8 1.0
CB A:ILE90 4.1 17.8 1.0
CG1 A:ILE90 4.1 24.2 1.0
CA A:ILE90 4.2 20.8 1.0
O A:ILE90 4.3 24.1 1.0
N A:GLN89 4.6 22.7 1.0
C A:ILE88 4.6 24.4 1.0
CG A:GLN89 4.6 30.5 1.0
CB A:GLN89 4.7 26.8 1.0
C A:ILE90 4.7 20.8 1.0
CD1 A:ILE90 4.8 27.0 1.0

Chlorine binding site 3 out of 4 in 2od4

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Chlorine binding site 3 out of 4 in the Crystal Structure of A Dimeric Ferredoxin-Like Protein (JCVI_PEP_1096665735785) From Uncultured Marine Organism at 1.70 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of A Dimeric Ferredoxin-Like Protein (JCVI_PEP_1096665735785) From Uncultured Marine Organism at 1.70 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl101

b:22.5
occ:1.00
OH B:TYR62 2.9 23.6 1.0
NH1 B:ARG11 3.2 23.1 1.0
NE1 B:TRP34 3.3 20.6 1.0
CD1 B:ILE60 3.7 26.3 1.0
CD B:ARG11 3.7 23.1 1.0
CE2 B:TYR62 3.8 19.9 1.0
CZ B:TYR62 3.8 19.0 1.0
CG1 B:ILE60 3.9 21.8 1.0
CZ2 B:TRP34 4.0 20.7 1.0
CD1 B:ILE75 4.0 24.0 1.0
CE2 B:TRP34 4.0 20.4 1.0
CG1 B:VAL38 4.1 16.8 1.0
CZ B:ARG11 4.2 22.4 1.0
CD1 B:PHE72 4.3 28.4 1.0
CB B:ILE60 4.3 21.7 1.0
NE B:ARG11 4.3 24.1 1.0
CG2 B:ILE60 4.4 23.1 1.0
CD1 B:TRP34 4.5 21.5 1.0
CG B:ARG11 4.6 20.1 1.0
CB B:VAL38 4.7 18.5 1.0
CB B:ARG11 4.8 20.5 1.0
CE1 B:PHE72 4.8 24.5 1.0
CG2 B:VAL38 4.9 18.8 1.0

Chlorine binding site 4 out of 4 in 2od4

Go back to Chlorine Binding Sites List in 2od4
Chlorine binding site 4 out of 4 in the Crystal Structure of A Dimeric Ferredoxin-Like Protein (JCVI_PEP_1096665735785) From Uncultured Marine Organism at 1.70 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of A Dimeric Ferredoxin-Like Protein (JCVI_PEP_1096665735785) From Uncultured Marine Organism at 1.70 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl102

b:29.9
occ:1.00
NH1 B:ARG87 3.4 29.9 1.0
CB B:ARG87 3.8 19.9 1.0
CD B:ARG87 3.9 25.6 1.0
CG B:ARG87 3.9 19.4 1.0
O B:HOH186 4.4 48.4 1.0
CZ B:ARG87 4.4 30.1 1.0
CA B:ARG87 4.6 20.4 1.0
NE B:ARG87 4.6 25.8 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sat Jul 20 09:29:13 2024

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