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Chlorine in PDB 5uzx: Crystal Structure of Putative Short-Chain Dehydrogenase/Reductase From Burkholderia Multivorans with Bound Nadp

Protein crystallography data

The structure of Crystal Structure of Putative Short-Chain Dehydrogenase/Reductase From Burkholderia Multivorans with Bound Nadp, PDB code: 5uzx was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.20 / 1.50
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 46.400, 76.150, 65.480, 90.00, 109.86, 90.00
R / Rfree (%) 16.5 / 19.9

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Putative Short-Chain Dehydrogenase/Reductase From Burkholderia Multivorans with Bound Nadp (pdb code 5uzx). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Putative Short-Chain Dehydrogenase/Reductase From Burkholderia Multivorans with Bound Nadp, PDB code: 5uzx:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 5uzx

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Chlorine binding site 1 out of 4 in the Crystal Structure of Putative Short-Chain Dehydrogenase/Reductase From Burkholderia Multivorans with Bound Nadp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Putative Short-Chain Dehydrogenase/Reductase From Burkholderia Multivorans with Bound Nadp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:38.6
occ:1.00
O2B A:NAP301 2.8 20.7 0.7
N3A A:NAP301 2.9 17.5 0.7
O A:HOH440 3.2 22.9 1.0
OG A:SER17 3.4 26.5 1.0
C1B A:NAP301 3.6 20.3 0.7
C2B A:NAP301 3.7 18.1 0.7
C2A A:NAP301 3.7 21.3 0.7
O3B A:NAP301 3.7 20.3 0.7
CA A:GLY15 3.7 19.0 1.0
N A:ARG40 3.7 21.0 1.0
CA A:VAL39 3.7 19.7 1.0
O A:HOH489 3.7 33.8 1.0
O1X A:NAP301 3.8 21.1 0.7
C4A A:NAP301 3.8 16.4 0.7
P2B A:NAP301 3.8 20.6 0.7
O A:THR38 3.9 22.6 1.0
C A:VAL39 4.0 19.8 1.0
CB A:SER17 4.0 25.8 1.0
N9A A:NAP301 4.1 17.6 0.7
C A:GLY15 4.3 19.6 1.0
CG A:ARG40 4.3 26.6 1.0
C3B A:NAP301 4.3 19.2 0.7
N A:ALA16 4.4 20.2 1.0
O3X A:NAP301 4.4 21.9 0.7
N A:SER17 4.4 20.6 1.0
C A:THR38 4.5 18.5 1.0
N A:VAL39 4.5 18.2 1.0
N A:GLY15 4.6 19.1 1.0
CB A:VAL39 4.7 21.7 1.0
CB A:ARG40 4.7 24.7 1.0
CA A:ARG40 4.8 24.3 1.0
O4B A:NAP301 4.9 19.1 0.7
NE A:ARG40 4.9 28.0 1.0
CA A:SER17 4.9 19.8 1.0
N1A A:NAP301 4.9 19.2 0.7
O A:LEU64 4.9 20.4 1.0
O A:VAL39 4.9 20.1 1.0

Chlorine binding site 2 out of 4 in 5uzx

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Chlorine binding site 2 out of 4 in the Crystal Structure of Putative Short-Chain Dehydrogenase/Reductase From Burkholderia Multivorans with Bound Nadp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Putative Short-Chain Dehydrogenase/Reductase From Burkholderia Multivorans with Bound Nadp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:24.9
occ:1.00
O A:HOH593 3.0 33.9 1.0
N A:GLY144 3.1 20.8 1.0
N A:GLY190 3.1 20.8 1.0
CA A:GLY190 3.6 23.4 1.0
CD A:PRO189 3.6 17.3 1.0
C5N A:NAP301 3.7 18.1 0.7
N A:PRO189 3.7 16.5 1.0
C A:ALA188 3.8 17.8 1.0
CB A:ALA188 3.8 21.3 1.0
C A:GLY190 3.8 26.1 1.0
O1 A:EDO304 3.8 36.6 0.5
O A:GLY190 3.8 26.0 1.0
CA A:GLY144 3.9 18.2 1.0
CA A:ALA188 3.9 15.4 1.0
OG A:SER143 4.0 19.4 1.0
C A:SER143 4.0 16.6 1.0
CA A:SER143 4.0 18.0 1.0
O A:HOH534 4.2 33.7 1.0
C A:PRO189 4.2 21.8 1.0
C4N A:NAP301 4.2 19.3 0.7
O A:ALA188 4.4 19.9 1.0
CG A:PRO189 4.4 18.6 1.0
CA A:PRO189 4.5 18.7 1.0
CB A:SER143 4.6 19.8 1.0
N A:TRP191 4.6 26.3 1.0
C6N A:NAP301 4.7 16.6 0.7
C A:GLY144 4.9 17.9 1.0
N A:GLN145 5.0 17.1 1.0

Chlorine binding site 3 out of 4 in 5uzx

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Chlorine binding site 3 out of 4 in the Crystal Structure of Putative Short-Chain Dehydrogenase/Reductase From Burkholderia Multivorans with Bound Nadp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Putative Short-Chain Dehydrogenase/Reductase From Burkholderia Multivorans with Bound Nadp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl302

b:36.6
occ:1.00
O B:HOH438 2.9 19.3 1.0
O2B B:NAP301 3.0 18.6 0.8
N3A B:NAP301 3.0 16.0 0.8
O B:HOH409 3.3 27.4 1.0
CA B:GLY15 3.6 16.7 1.0
OG B:SER17 3.6 21.0 1.0
O3B B:NAP301 3.7 16.6 0.8
CA B:VAL39 3.7 19.2 1.0
O B:THR38 3.7 18.8 1.0
C2A B:NAP301 3.7 16.9 0.8
N B:ARG40 3.7 19.9 1.0
C1B B:NAP301 3.7 18.4 0.8
C2B B:NAP301 3.9 17.9 0.8
C4A B:NAP301 3.9 14.4 0.8
O1X B:NAP301 3.9 18.4 0.8
C B:VAL39 4.0 18.5 1.0
P2B B:NAP301 4.0 19.3 0.8
C B:GLY15 4.1 18.4 1.0
CB B:SER17 4.2 19.4 1.0
N B:ALA16 4.2 16.5 1.0
CG B:ARG40 4.2 25.8 1.0
N9A B:NAP301 4.2 17.2 0.8
C B:THR38 4.3 17.4 1.0
N B:SER17 4.4 17.7 1.0
N B:VAL39 4.4 18.1 1.0
C3B B:NAP301 4.4 15.6 0.8
N B:GLY15 4.4 15.7 1.0
O3X B:NAP301 4.6 20.2 0.8
CB B:VAL39 4.7 21.4 1.0
CB B:ARG40 4.8 22.4 1.0
CA B:ARG40 4.8 23.5 1.0
O B:LEU64 4.8 18.0 1.0
CA B:SER17 4.9 17.9 1.0
O B:VAL39 4.9 20.0 1.0
NE B:ARG40 4.9 24.2 1.0
N1A B:NAP301 4.9 14.1 0.8
O4B B:NAP301 5.0 18.1 0.8

Chlorine binding site 4 out of 4 in 5uzx

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Chlorine binding site 4 out of 4 in the Crystal Structure of Putative Short-Chain Dehydrogenase/Reductase From Burkholderia Multivorans with Bound Nadp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Putative Short-Chain Dehydrogenase/Reductase From Burkholderia Multivorans with Bound Nadp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl303

b:22.2
occ:1.00
N B:GLY144 3.0 18.4 1.0
O B:HOH610 3.0 34.8 1.0
N B:GLY190 3.2 18.8 1.0
CA B:GLY190 3.6 20.0 1.0
CB B:ALA188 3.7 18.7 1.0
O2 B:EDO307 3.7 24.9 0.5
C5N B:NAP301 3.7 18.0 0.8
CD B:PRO189 3.7 15.3 1.0
N B:PRO189 3.7 14.6 1.0
C B:ALA188 3.8 17.0 1.0
CA B:GLY144 3.8 17.6 1.0
C B:GLY190 3.8 22.3 1.0
CA B:ALA188 3.8 14.1 1.0
O B:GLY190 3.9 21.2 1.0
C B:SER143 4.0 17.8 1.0
OG B:SER143 4.0 17.9 1.0
CA B:SER143 4.0 16.5 1.0
C4N B:NAP301 4.2 18.7 0.8
C B:PRO189 4.3 18.3 1.0
O B:ALA188 4.4 18.1 1.0
CG B:PRO189 4.5 18.2 1.0
O B:HOH539 4.6 36.9 1.0
CA B:PRO189 4.6 18.5 1.0
CB B:SER143 4.6 19.3 1.0
O B:HOH617 4.6 51.0 1.0
N B:TRP191 4.6 20.5 1.0
C6N B:NAP301 4.7 16.2 0.8
O B:HOH621 4.9 33.8 1.0
C B:GLY144 4.9 18.2 1.0
O1 B:EDO307 5.0 21.9 0.5
N B:GLN145 5.0 17.9 1.0
C2 B:EDO307 5.0 29.1 0.5

Reference:

S.L.Delker, S.J.Mayclin, D.Lorimer, T.E.Edwards. Crystal Structure of Putative Short-Chain Dehydrogenase/Reductase From Burkholderia Multivorans with Bound Nadp To Be Published.
Page generated: Sat Jul 12 09:38:57 2025

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