Atomistry » Chlorine » PDB 6zpd-6zyu » 6zpd
Atomistry »
  Chlorine »
    PDB 6zpd-6zyu »
      6zpd »

Chlorine in PDB 6zpd: Gamma-Tocopherol Transfer Protein

Protein crystallography data

The structure of Gamma-Tocopherol Transfer Protein, PDB code: 6zpd was solved by W.Aeschimann, S.Kammer, S.Staats, A.Stocker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.41 / 2.24
Space group I 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 167.687, 167.687, 167.687, 90.00, 90.00, 90.00
R / Rfree (%) 18.2 / 21.8

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Gamma-Tocopherol Transfer Protein (pdb code 6zpd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Gamma-Tocopherol Transfer Protein, PDB code: 6zpd:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6zpd

Go back to Chlorine Binding Sites List in 6zpd
Chlorine binding site 1 out of 2 in the Gamma-Tocopherol Transfer Protein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Gamma-Tocopherol Transfer Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:97.0
occ:1.00
NE2 A:HIS236 3.2 35.6 1.0
O A:HOH552 3.3 61.2 1.0
ND1 A:HIS223 3.7 39.6 1.0
CE1 A:HIS225 3.7 49.0 1.0
CD2 A:HIS236 4.1 27.1 1.0
CE1 A:HIS236 4.1 42.1 1.0
ND1 A:HIS225 4.3 45.0 1.0
CG A:HIS223 4.5 35.4 1.0
CB A:HIS223 4.5 35.6 1.0
CE1 A:HIS223 4.6 41.4 1.0
NE2 A:HIS225 4.6 38.4 1.0
CB A:SER232 4.7 54.5 1.0

Chlorine binding site 2 out of 2 in 6zpd

Go back to Chlorine Binding Sites List in 6zpd
Chlorine binding site 2 out of 2 in the Gamma-Tocopherol Transfer Protein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Gamma-Tocopherol Transfer Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl304

b:75.4
occ:1.00
O A:HOH407 2.3 68.9 1.0
O A:HOH563 3.0 60.3 1.0
N A:SER84 3.8 51.9 1.0
NH1 A:ARG134 4.0 43.6 0.4
O A:GLU82 4.1 71.5 1.0
OG A:SER84 4.2 73.3 1.0
CA A:ILE83 4.2 76.4 1.0
CB A:SER84 4.4 64.1 1.0
C A:ILE83 4.6 73.7 1.0
CD1 A:TYR130 4.6 59.0 1.0
CB A:TYR130 4.6 43.0 1.0
CG A:TYR130 4.7 60.6 1.0
CA A:SER84 4.8 58.4 1.0
O A:HOH470 4.8 58.8 1.0
CG1 A:ILE83 4.9 56.7 1.0
O A:HOH402 4.9 55.4 1.0
C A:GLU82 5.0 74.3 1.0

Reference:

W.Aeschimann, S.Kammer, S.Staats, P.Schneider, G.Schneider, G.Rimbach, M.Cascella, A.Stocker. Engineering of A Functional Gamma-Tocopherol Transfer Protein. Redox Biol V. 38 01773 2020.
ISSN: ISSN 2213-2317
PubMed: 33197771
DOI: 10.1016/J.REDOX.2020.101773
Page generated: Mon Jul 29 18:10:07 2024

Last articles

Cl in 3O3P
Cl in 3O2R
Cl in 3O40
Cl in 3O3Y
Cl in 3O32
Cl in 3O24
Cl in 3O3L
Cl in 3O2K
Cl in 3O2B
Cl in 3O0H
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy