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Chlorine in PDB 8d2z: Crystal Structure of A Metallo-Beta-Lactamase Superfamily Protein From Burkholderia Cenocepacia

Protein crystallography data

The structure of Crystal Structure of A Metallo-Beta-Lactamase Superfamily Protein From Burkholderia Cenocepacia, PDB code: 8d2z was solved by Seattle Structural Genomics Center For Infectious Disease, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.44 / 1.85
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 58.16, 89.39, 121.58, 90, 90, 90
R / Rfree (%) 15.1 / 18.3

Other elements in 8d2z:

The structure of Crystal Structure of A Metallo-Beta-Lactamase Superfamily Protein From Burkholderia Cenocepacia also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Metallo-Beta-Lactamase Superfamily Protein From Burkholderia Cenocepacia (pdb code 8d2z). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of A Metallo-Beta-Lactamase Superfamily Protein From Burkholderia Cenocepacia, PDB code: 8d2z:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 8d2z

Go back to Chlorine Binding Sites List in 8d2z
Chlorine binding site 1 out of 2 in the Crystal Structure of A Metallo-Beta-Lactamase Superfamily Protein From Burkholderia Cenocepacia


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Metallo-Beta-Lactamase Superfamily Protein From Burkholderia Cenocepacia within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:29.3
occ:1.00
N A:ARG146 3.2 25.6 1.0
N A:GLU147 3.4 24.3 1.0
O A:GLU147 3.4 26.7 1.0
N A:GLU145 3.6 24.1 1.0
CB A:GLU145 4.0 24.3 1.0
CA A:ARG146 4.0 28.5 1.0
CB A:ARG146 4.0 29.4 1.0
CA A:GLU145 4.0 25.6 1.0
C A:GLU145 4.1 28.9 1.0
C A:GLU147 4.1 27.7 1.0
C A:ARG146 4.2 28.9 1.0
CB A:PHE144 4.3 20.4 1.0
CA A:GLU147 4.4 27.9 1.0
C A:PHE144 4.6 26.3 1.0
CD2 A:PHE144 4.7 22.8 1.0
CA A:PHE144 4.7 23.8 1.0
CG2 A:ILE148 4.7 26.9 1.0

Chlorine binding site 2 out of 2 in 8d2z

Go back to Chlorine Binding Sites List in 8d2z
Chlorine binding site 2 out of 2 in the Crystal Structure of A Metallo-Beta-Lactamase Superfamily Protein From Burkholderia Cenocepacia


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Metallo-Beta-Lactamase Superfamily Protein From Burkholderia Cenocepacia within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:34.5
occ:1.00
O A:HOH561 2.6 45.5 1.0
NH1 A:ARG309 3.0 26.1 0.5
O2 A:MRD405 3.3 36.3 0.8
CD A:ARG309 3.5 24.1 0.5
CG A:ARG309 3.6 23.8 0.5
NE A:ARG309 3.7 24.2 0.5
CD A:ARG309 3.8 23.3 0.5
CG A:ARG309 3.8 24.1 0.5
CZ A:ARG309 4.1 26.4 0.5
CD A:ARG303 4.2 27.3 1.0
CB A:ARG309 4.3 22.4 0.5
CB A:ARG309 4.4 22.4 0.5
NE A:ARG309 4.4 25.2 0.5
O A:HOH630 4.5 35.8 1.0
CZ A:ARG309 4.6 25.7 0.5
C2 A:MRD405 4.8 37.3 0.8
NE A:ARG303 4.8 24.9 1.0
O4 A:MRD405 4.9 32.8 0.8

Reference:

J.Abendroth, D.M.Dranow, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of A Metallo-Beta-Lactamase Superfamily Protein From Burkholderia Cenocepacia To Be Published.
Page generated: Sun Jul 13 10:31:51 2025

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