Atomistry » Chlorine » PDB 8zva-9bcn » 9b12
Atomistry »
  Chlorine »
    PDB 8zva-9bcn »
      9b12 »

Chlorine in PDB 9b12: Structure of Optineurin Bound to Hoip NZF1 Domain and M1-Linked Diubiquitin, Crystal Form 1

Enzymatic activity of Structure of Optineurin Bound to Hoip NZF1 Domain and M1-Linked Diubiquitin, Crystal Form 1

All present enzymatic activity of Structure of Optineurin Bound to Hoip NZF1 Domain and M1-Linked Diubiquitin, Crystal Form 1:
2.3.2.31;

Protein crystallography data

The structure of Structure of Optineurin Bound to Hoip NZF1 Domain and M1-Linked Diubiquitin, Crystal Form 1, PDB code: 9b12 was solved by M.A.Michel, S.Scutts, D.Komander, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.15 / 1.81
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 110.413, 70.191, 193.944, 90, 102.25, 90
R / Rfree (%) 23.1 / 26.9

Other elements in 9b12:

The structure of Structure of Optineurin Bound to Hoip NZF1 Domain and M1-Linked Diubiquitin, Crystal Form 1 also contains other interesting chemical elements:

Zinc (Zn) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Optineurin Bound to Hoip NZF1 Domain and M1-Linked Diubiquitin, Crystal Form 1 (pdb code 9b12). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Structure of Optineurin Bound to Hoip NZF1 Domain and M1-Linked Diubiquitin, Crystal Form 1, PDB code: 9b12:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 9b12

Go back to Chlorine Binding Sites List in 9b12
Chlorine binding site 1 out of 3 in the Structure of Optineurin Bound to Hoip NZF1 Domain and M1-Linked Diubiquitin, Crystal Form 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Optineurin Bound to Hoip NZF1 Domain and M1-Linked Diubiquitin, Crystal Form 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl601

b:69.5
occ:1.00
NH1 I:ARG351 2.7 34.0 0.6
NZ F:LYS429 3.0 31.7 1.0
CZ I:ARG351 3.7 41.2 0.6
NH2 I:ARG351 3.7 29.9 0.6
OE1 E:GLU434 3.8 31.6 1.0
CE F:LYS429 4.0 31.4 1.0
CD2 E:LEU430 4.3 24.7 1.0
CD F:LYS429 4.6 25.2 1.0
NH2 I:ARG377 4.6 27.4 1.0
O E:HOH607 4.7 45.6 1.0
O I:HOH506 4.7 29.4 1.0
CD E:GLU434 4.7 29.3 1.0
NE I:ARG351 4.9 44.3 0.6
CG E:LEU430 5.0 25.6 1.0

Chlorine binding site 2 out of 3 in 9b12

Go back to Chlorine Binding Sites List in 9b12
Chlorine binding site 2 out of 3 in the Structure of Optineurin Bound to Hoip NZF1 Domain and M1-Linked Diubiquitin, Crystal Form 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Optineurin Bound to Hoip NZF1 Domain and M1-Linked Diubiquitin, Crystal Form 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl201

b:62.4
occ:1.00
NH2 B:ARG150 2.5 89.2 1.0
CZ B:ARG150 3.0 91.6 1.0
NE B:ARG150 3.2 91.2 1.0
NH1 B:ARG148 3.6 39.5 1.0
CZ B:ARG148 3.9 37.5 1.0
NH1 B:ARG150 4.0 79.6 1.0
NE B:ARG148 4.2 46.0 1.0
CD B:ARG148 4.4 42.5 1.0
CD B:ARG150 4.4 84.8 1.0
NH2 B:ARG148 4.4 47.7 1.0
CG B:ARG150 4.9 80.2 1.0

Chlorine binding site 3 out of 3 in 9b12

Go back to Chlorine Binding Sites List in 9b12
Chlorine binding site 3 out of 3 in the Structure of Optineurin Bound to Hoip NZF1 Domain and M1-Linked Diubiquitin, Crystal Form 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of Optineurin Bound to Hoip NZF1 Domain and M1-Linked Diubiquitin, Crystal Form 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Cl403

b:54.7
occ:1.00
NH2 J:ARG351 3.0 33.6 0.5
N J:ARG351 3.2 58.7 1.0
O J:ARG351 3.2 55.5 1.0
O J:GLY352 3.3 47.0 1.0
CZ J:ARG351 3.4 46.9 0.5
C J:ARG351 3.5 60.4 1.0
NH1 J:ARG351 3.6 43.3 0.5
CA J:ARG351 3.8 58.3 0.5
CA J:ARG351 3.9 58.3 0.5
NZ E:LYS429 4.0 44.8 1.0
NE J:ARG351 4.1 39.7 0.5
CD J:ARG377 4.2 23.4 1.0
NE J:ARG377 4.2 30.0 1.0
N J:GLY352 4.2 51.3 1.0
CD1 J:TRP354 4.2 23.9 1.0
CB J:ARG351 4.3 62.0 0.5
C J:GLY352 4.3 45.6 1.0
CZ J:ARG377 4.4 28.1 1.0
CB J:ARG351 4.5 62.5 0.5
O F:HOH703 4.6 28.7 1.0
CB J:TRP354 4.7 29.1 1.0
NH1 J:ARG377 4.7 28.5 1.0
CG J:TRP354 4.7 29.4 1.0
CG J:ARG351 4.8 62.8 0.5
CA J:GLY352 4.8 48.0 1.0
O J:ALA365 4.8 36.9 1.0
CA J:ALA365 5.0 34.9 1.0
NH2 J:ARG351 5.0 42.4 0.5

Reference:

M.A.Michel, S.Scutts, D.Komander. Linkage and Substrate Specificity Conferred By Nzf Ubiquitin Binding Domains To Be Published.
Page generated: Sun Jul 13 16:01:35 2025

Last articles

Cu in 9IX9
Cu in 9GDF
Cu in 9DB8
Co in 9DBA
Cl in 9VKN
Cl in 9VWY
Cl in 9RHW
Cl in 9PMN
Cl in 9RAU
Cl in 9RF2
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy