Chlorine in PDB 2oxq: Structure of the UBCH5 :Chip U-Box Complex

All present enzymatic activity of Structure of the UBCH5 :Chip U-Box Complex:
6.3.2.19;

The structure of Structure of the UBCH5 :Chip U-Box Complex, PDB code: 2oxq was solved by Z.Xu, J.C.Nix, K.I.Devlin, S.Misra, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	53.23 / 2.90
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	79.042, 93.399, 144.009, 90.00, 90.00, 90.00
R / Rfree (%)	24 / 27.2

The binding sites of Chlorine atom in the Structure of the UBCH5 :Chip U-Box Complex (pdb code 2oxq). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Structure of the UBCH5 :Chip U-Box Complex, PDB code: 2oxq:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in the Structure of the UBCH5 :Chip U-Box Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of the UBCH5 :Chip U-Box Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl1 b:60.7 occ:1.00 N C:ASP234 3.2 61.1 1.0 CA C:GLY214 3.2 68.4 1.0 N C:ILE216 3.3 66.8 1.0 N C:LYS215 3.3 66.5 1.0 C C:GLY214 3.5 67.9 1.0 CB C:ILE216 3.6 63.4 1.0 N C:SER217 3.7 72.1 1.0 CA C:TYR233 3.7 57.8 1.0 CB C:TYR233 3.8 56.8 1.0 OD2 C:ASP237 3.8 72.8 1.0 CB C:ASP237 3.8 69.6 1.0 CA C:ILE216 3.9 67.0 1.0 C C:TYR233 4.0 59.5 1.0 OG C:SER217 4.0 74.0 1.0 CB C:ASP234 4.0 62.6 1.0 CG1 C:ILE216 4.0 61.6 1.0 CG C:ASP237 4.2 71.2 1.0 CD1 C:TYR233 4.2 56.5 1.0 CA C:ASP234 4.2 62.4 1.0 C C:LYS215 4.3 67.0 1.0 C C:ILE216 4.3 70.5 1.0 CA C:LYS215 4.3 65.7 1.0 O C:GLY214 4.4 69.0 1.0 CD1 C:ILE216 4.5 60.4 1.0 CB C:SER217 4.5 73.2 1.0 CG C:TYR233 4.5 56.7 1.0 N C:GLY214 4.6 68.6 1.0 O C:ASP234 4.6 63.0 1.0 CA C:SER217 4.7 72.9 1.0 CG2 C:ILE216 4.8 62.5 1.0 CB C:LYS215 4.8 62.4 1.0 C C:ASP234 4.9 63.2 1.0

Chlorine binding site 2 out of 3 in the Structure of the UBCH5 :Chip U-Box Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of the UBCH5 :Chip U-Box Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl6 b:97.1 occ:1.00 O D:GLY230 2.9 54.4 1.0 OG1 D:THR232 2.9 48.8 1.0 N D:THR232 3.0 53.2 1.0 N C:ALA266 3.1 55.1 1.0 CA D:ILE231 3.3 54.9 1.0 C D:ILE231 3.4 54.8 1.0 CB C:ALA266 3.5 55.8 1.0 C D:GLY230 3.6 54.7 1.0 CB D:THR232 3.8 51.5 1.0 N D:ILE231 3.8 54.3 1.0 CD1 D:ILE226 3.8 51.0 1.0 CB C:LEU265 3.8 49.3 1.0 CA C:ALA266 3.9 57.0 1.0 CA D:THR232 3.9 52.5 1.0 N C:LEU265 4.0 53.1 1.0 C C:LEU265 4.1 54.0 1.0 CG1 D:ILE226 4.1 51.0 1.0 CA C:LEU265 4.2 52.3 1.0 ND2 C:ASN264 4.4 49.7 1.0 O D:ILE231 4.5 56.5 1.0 C C:ASN264 4.7 53.5 1.0 CB D:ILE231 4.7 55.2 1.0 CG C:LEU265 4.8 46.5 1.0 CA D:GLY230 4.8 54.9 1.0 CB D:ILE226 4.8 51.0 1.0 OD1 D:ASN264 4.9 55.7 1.0 CD1 C:LEU265 5.0 44.6 1.0

Chlorine binding site 3 out of 3 in the Structure of the UBCH5 :Chip U-Box Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of the UBCH5 :Chip U-Box Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl7 b:65.7 occ:1.00 N D:ILE216 3.1 66.6 1.0 CA D:GLY214 3.1 71.3 1.0 C D:GLY214 3.3 69.4 1.0 N D:SER217 3.3 72.6 1.0 N D:ASP234 3.3 63.3 1.0 CB D:ILE216 3.3 68.5 1.0 N D:LYS215 3.5 66.7 1.0 CA D:ILE216 3.6 68.9 1.0 CB D:ASP237 3.7 68.7 1.0 CG1 D:ILE216 3.8 68.0 1.0 O D:GLY214 3.9 70.3 1.0 OG D:SER217 3.9 75.5 1.0 OD2 D:ASP237 3.9 72.2 1.0 CB D:ASP234 4.0 68.4 1.0 CA D:TYR233 4.0 59.5 1.0 C D:ILE216 4.0 70.9 1.0 CB D:TYR233 4.1 59.1 1.0 C D:TYR233 4.1 61.9 1.0 CB D:SER217 4.2 74.6 1.0 C D:LYS215 4.2 64.7 1.0 CG D:ASP237 4.2 71.7 1.0 CA D:ASP234 4.2 65.5 1.0 CD1 D:TYR233 4.3 60.7 1.0 CD1 D:ILE216 4.3 65.8 1.0 CA D:SER217 4.4 74.5 1.0 N D:GLY214 4.4 72.8 1.0 CA D:LYS215 4.4 64.0 1.0 O D:ASP234 4.4 66.3 1.0 CG2 D:ILE216 4.6 69.1 1.0 CG D:TYR233 4.7 60.2 1.0 C D:ASP234 4.9 65.9 1.0 N D:ILE238 4.9 63.1 1.0 CA D:ASP237 5.0 66.8 1.0

Z.Xu, E.Kohli, K.I.Devlin, M.Bold, J.C.Nix, S.Misra. Interactions Between the Quality Control Ubiquitin Ligase Chip and Ubiquitin Conjugating Enzymes. Bmc Struct.Biol. V. 8 26 2008.
ISSN: ESSN 1472-6807
PubMed: 18485199
DOI: 10.1186/1472-6807-8-26