Atomistry » Chlorine » PDB 2pg4-2pwr » 2pwm
Atomistry »
  Chlorine »
    PDB 2pg4-2pwr »
      2pwm »

Chlorine in PDB 2pwm: Crystal Structure of Hiv-1 CA146 A92E Real Cell

Protein crystallography data

The structure of Crystal Structure of Hiv-1 CA146 A92E Real Cell, PDB code: 2pwm was solved by B.N.Kelly, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.21 / 1.90
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 48.210, 58.931, 92.328, 71.51, 88.12, 83.01
R / Rfree (%) 20.4 / 27

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Hiv-1 CA146 A92E Real Cell (pdb code 2pwm). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 8 binding sites of Chlorine where determined in the Crystal Structure of Hiv-1 CA146 A92E Real Cell, PDB code: 2pwm:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Chlorine binding site 1 out of 8 in 2pwm

Go back to Chlorine Binding Sites List in 2pwm
Chlorine binding site 1 out of 8 in the Crystal Structure of Hiv-1 CA146 A92E Real Cell


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Hiv-1 CA146 A92E Real Cell within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl902

b:15.9
occ:1.00
 O A:HOH931 3.1 24.2 1.0
N A:GLU128 3.2 10.9 1.0
O A:HOH924 3.2 25.1 1.0
N A:GLY127 3.3 8.4 1.0
C A:PRO125 3.4 10.1 1.0
CA A:PRO125 3.4 11.2 1.0
CA A:GLY127 3.5 9.6 1.0
CB A:PRO125 3.6 12.4 1.0
O A:PRO125 3.6 9.0 1.0
CE A:MET118 3.6 11.3 1.0
CG A:MET118 3.6 12.1 1.0
CG A:GLU128 3.8 14.2 1.0
N A:VAL126 3.8 8.9 1.0
C A:GLY127 3.9 10.6 1.0
SD A:MET118 4.1 12.7 1.0
CB A:GLU128 4.3 12.6 1.0
CA A:GLU128 4.3 11.3 1.0
C A:VAL126 4.3 9.1 1.0
CB A:MET118 4.4 13.4 1.0
O A:ALA47 4.7 11.4 1.0
CA A:VAL126 4.7 8.5 1.0
CD A:GLU128 4.8 18.7 1.0
OE2 A:GLU128 4.8 21.5 1.0
N A:PRO125 4.9 12.8 1.0
CA A:MET118 5.0 12.8 1.0

Chlorine binding site 2 out of 8 in 2pwm

Go back to Chlorine Binding Sites List in 2pwm
Chlorine binding site 2 out of 8 in the Crystal Structure of Hiv-1 CA146 A92E Real Cell


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Hiv-1 CA146 A92E Real Cell within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl904

b:15.5
occ:1.00
 N B:GLU128 3.2 9.8 1.0
N B:GLY127 3.3 9.3 1.0
CA B:PRO125 3.4 10.7 1.0
C B:PRO125 3.4 10.2 1.0
CA B:GLY127 3.6 9.5 1.0
CB B:PRO125 3.7 11.1 1.0
O B:PRO125 3.7 9.4 1.0
CG B:MET118 3.7 8.8 1.0
CE B:MET118 3.7 11.4 1.0
CG B:GLU128 3.9 11.3 1.0
O B:HOH930 3.9 18.6 1.0
C B:GLY127 3.9 9.0 1.0
N B:VAL126 3.9 10.1 1.0
CB B:GLU128 4.2 10.3 1.0
CA B:GLU128 4.3 9.7 1.0
SD B:MET118 4.3 12.8 1.0
C B:VAL126 4.3 9.0 1.0
CB B:MET118 4.5 9.1 1.0
O B:HOH952 4.7 25.5 1.0
CA B:VAL126 4.7 9.6 1.0
N B:PRO125 4.8 11.7 1.0
CD B:GLU128 5.0 15.5 1.0

Chlorine binding site 3 out of 8 in 2pwm

Go back to Chlorine Binding Sites List in 2pwm
Chlorine binding site 3 out of 8 in the Crystal Structure of Hiv-1 CA146 A92E Real Cell


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Hiv-1 CA146 A92E Real Cell within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl901

b:15.0
occ:1.00
 O C:HOH940 2.9 31.7 1.0
N C:GLU128 3.2 8.1 1.0
N C:GLY127 3.2 6.8 1.0
CA C:PRO125 3.4 10.7 1.0
C C:PRO125 3.4 10.3 1.0
CB C:PRO125 3.6 11.3 1.0
CA C:GLY127 3.6 6.6 1.0
O C:HOH908 3.6 23.0 1.0
CE C:MET118 3.7 11.2 1.0
O C:PRO125 3.7 11.2 1.0
CG C:MET118 3.7 12.7 1.0
N C:VAL126 3.8 9.9 1.0
CG C:GLU128 3.8 11.6 1.0
C C:GLY127 3.9 8.2 1.0
CB C:GLU128 4.2 8.6 1.0
C C:VAL126 4.3 8.3 1.0
CA C:GLU128 4.3 8.9 1.0
SD C:MET118 4.3 12.7 1.0
CB C:MET118 4.4 11.8 1.0
CA C:VAL126 4.7 9.0 1.0
N C:PRO125 4.8 12.1 1.0
CD C:GLU128 4.9 14.2 1.0
CA C:MET118 5.0 11.1 1.0

Chlorine binding site 4 out of 8 in 2pwm

Go back to Chlorine Binding Sites List in 2pwm
Chlorine binding site 4 out of 8 in the Crystal Structure of Hiv-1 CA146 A92E Real Cell


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Hiv-1 CA146 A92E Real Cell within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl903

b:15.8
occ:1.00
 O D:HOH950 3.0 22.6 1.0
N D:GLU128 3.2 8.4 1.0
N D:GLY127 3.4 6.3 1.0
C D:PRO125 3.4 10.7 1.0
O D:HOH925 3.4 30.5 1.0
CA D:PRO125 3.4 11.2 1.0
CB D:PRO125 3.5 11.4 1.0
CG D:GLU128 3.6 10.6 1.0
O D:PRO125 3.6 9.8 1.0
CA D:GLY127 3.7 6.2 1.0
CE D:MET118 3.7 10.7 1.0
CG D:MET118 3.7 9.5 1.0
N D:VAL126 3.8 9.6 1.0
C D:GLY127 3.9 7.2 1.0
CB D:GLU128 4.1 8.9 1.0
CA D:GLU128 4.2 7.9 1.0
SD D:MET118 4.3 12.7 1.0
C D:VAL126 4.4 8.3 1.0
CB D:MET118 4.5 9.7 1.0
CD D:GLU128 4.6 14.9 1.0
CA D:VAL126 4.7 8.7 1.0
OE2 D:GLU128 4.8 20.4 1.0
N D:PRO125 4.8 12.0 1.0
O D:ALA47 4.9 9.4 1.0
CG D:PRO125 5.0 12.1 1.0

Chlorine binding site 5 out of 8 in 2pwm

Go back to Chlorine Binding Sites List in 2pwm
Chlorine binding site 5 out of 8 in the Crystal Structure of Hiv-1 CA146 A92E Real Cell


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Hiv-1 CA146 A92E Real Cell within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl905

b:15.6
occ:1.00
 O E:HOH935 3.0 27.6 1.0
O E:HOH929 3.2 26.1 1.0
N E:GLU128 3.2 9.3 1.0
N E:GLY127 3.3 7.7 1.0
C E:PRO125 3.4 9.9 1.0
CA E:PRO125 3.4 10.3 1.0
CA E:GLY127 3.5 8.6 1.0
CB E:PRO125 3.6 12.7 1.0
O E:PRO125 3.6 8.8 1.0
CG E:MET118 3.7 10.2 1.0
CE E:MET118 3.7 11.5 1.0
CG E:GLU128 3.8 12.9 1.0
N E:VAL126 3.8 8.2 1.0
C E:GLY127 3.9 9.2 1.0
SD E:MET118 4.2 12.2 1.0
CB E:GLU128 4.2 11.6 1.0
CA E:GLU128 4.3 9.9 1.0
C E:VAL126 4.3 8.4 1.0
CB E:MET118 4.5 12.2 1.0
CD E:GLU128 4.7 18.3 1.0
O E:ALA47 4.7 10.5 1.0
CA E:VAL126 4.7 8.1 1.0
OE2 E:GLU128 4.8 20.4 1.0
N E:PRO125 4.8 11.9 1.0
CA E:MET118 5.0 12.0 1.0

Chlorine binding site 6 out of 8 in 2pwm

Go back to Chlorine Binding Sites List in 2pwm
Chlorine binding site 6 out of 8 in the Crystal Structure of Hiv-1 CA146 A92E Real Cell


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Hiv-1 CA146 A92E Real Cell within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl907

b:14.2
occ:1.00
 N F:GLU128 3.2 9.1 1.0
N F:GLY127 3.3 8.6 1.0
CA F:PRO125 3.4 10.4 1.0
C F:PRO125 3.4 9.8 1.0
CB F:PRO125 3.7 10.6 1.0
CG F:MET118 3.7 8.8 1.0
CE F:MET118 3.7 9.7 1.0
O F:PRO125 3.7 8.8 1.0
CA F:GLY127 3.7 9.2 1.0
O F:HOH938 3.9 19.7 1.0
CG F:GLU128 3.9 10.2 1.0
N F:VAL126 3.9 10.3 1.0
C F:GLY127 4.0 8.9 1.0
CB F:GLU128 4.2 9.2 1.0
SD F:MET118 4.3 11.8 1.0
CA F:GLU128 4.3 9.1 1.0
C F:VAL126 4.4 8.9 1.0
CB F:MET118 4.5 9.0 1.0
CA F:VAL126 4.7 8.8 1.0
O F:HOH961 4.8 24.7 1.0
N F:PRO125 4.9 11.8 1.0
CD F:GLU128 4.9 13.7 1.0

Chlorine binding site 7 out of 8 in 2pwm

Go back to Chlorine Binding Sites List in 2pwm
Chlorine binding site 7 out of 8 in the Crystal Structure of Hiv-1 CA146 A92E Real Cell


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Hiv-1 CA146 A92E Real Cell within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cl908

b:16.4
occ:1.00
 O G:HOH947 2.8 30.2 1.0
N G:GLY127 3.2 8.8 1.0
N G:GLU128 3.2 8.7 1.0
C G:PRO125 3.4 11.0 1.0
CA G:PRO125 3.4 10.8 1.0
CA G:GLY127 3.6 8.4 1.0
CB G:PRO125 3.6 11.8 1.0
O G:HOH917 3.6 22.9 1.0
CG G:MET118 3.7 12.7 1.0
O G:PRO125 3.7 11.1 1.0
CE G:MET118 3.7 12.1 1.0
CG G:GLU128 3.8 13.8 1.0
N G:VAL126 3.8 9.8 1.0
C G:GLY127 3.9 8.8 1.0
CB G:GLU128 4.2 10.4 1.0
C G:VAL126 4.3 9.7 1.0
CA G:GLU128 4.3 10.0 1.0
SD G:MET118 4.3 14.1 1.0
CB G:MET118 4.4 12.4 1.0
CA G:VAL126 4.6 9.8 1.0
N G:PRO125 4.8 12.4 1.0
CD G:GLU128 4.9 16.9 1.0
CA G:MET118 5.0 11.2 1.0

Chlorine binding site 8 out of 8 in 2pwm

Go back to Chlorine Binding Sites List in 2pwm
Chlorine binding site 8 out of 8 in the Crystal Structure of Hiv-1 CA146 A92E Real Cell


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of Hiv-1 CA146 A92E Real Cell within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl906

b:17.6
occ:1.00
 O H:HOH958 3.1 22.2 1.0
N H:GLU128 3.1 11.2 1.0
C H:PRO125 3.4 10.0 1.0
N H:GLY127 3.4 7.4 1.0
CA H:PRO125 3.4 11.1 1.0
O H:HOH930 3.4 29.6 1.0
CB H:PRO125 3.5 11.4 1.0
O H:PRO125 3.6 8.9 1.0
CE H:MET118 3.6 11.4 1.0
CG H:GLU128 3.6 12.3 1.0
CA H:GLY127 3.7 8.5 1.0
CG H:MET118 3.7 10.4 1.0
N H:VAL126 3.8 9.7 1.0
C H:GLY127 3.9 10.2 1.0
CB H:GLU128 4.1 10.2 1.0
CA H:GLU128 4.2 10.8 1.0
SD H:MET118 4.2 12.6 1.0
C H:VAL126 4.3 8.8 1.0
CB H:MET118 4.5 10.0 1.0
CD H:GLU128 4.7 16.3 1.0
CA H:VAL126 4.7 8.3 1.0
OE2 H:GLU128 4.8 21.7 1.0
N H:PRO125 4.8 12.7 1.0
O H:ALA47 4.8 10.2 1.0

Reference:

B.N.Kelly, S.Kyere, I.Kinde, C.Tang, B.R.Howard, H.Robinson, W.I.Sundquist, M.F.Summers, C.P.Hill. Structure of the Antiviral Assembly Inhibitor Cap-1 Complex with the Hiv-1 Ca Protein. J.Mol.Biol. V. 373 355 2007.
ISSN: ISSN 0022-2836
PubMed: 17826792
DOI: 10.1016/J.JMB.2007.07.070
Page generated: Sat Dec 12 09:15:50 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy