Chlorine in PDB 3d0g: Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Human Strain Complexed with Human-Civet Chimeric Receptor ACE2

Enzymatic activity of Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Human Strain Complexed with Human-Civet Chimeric Receptor ACE2

All present enzymatic activity of Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Human Strain Complexed with Human-Civet Chimeric Receptor ACE2:
3.4.17.23;

Protein crystallography data

The structure of Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Human Strain Complexed with Human-Civet Chimeric Receptor ACE2, PDB code: 3d0g was solved by F.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	47.14 / 2.80
*Space group*	P 1 2₁ 1
*Cell size a, b, c (Å), α, β, γ (°)*	80.008, 119.762, 108.801, 90.00, 96.22, 90.00
*R / R_free (%)*	21.4 / 27.9

Other elements in 3d0g:

The structure of Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Human Strain Complexed with Human-Civet Chimeric Receptor ACE2 also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Human Strain Complexed with Human-Civet Chimeric Receptor ACE2 (pdb code 3d0g). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Human Strain Complexed with Human-Civet Chimeric Receptor ACE2, PDB code: 3d0g:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3d0g

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Chlorine Binding Sites List in 3d0g

Chlorine binding site 1 out of 2 in the Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Human Strain Complexed with Human-Civet Chimeric Receptor ACE2

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Human Strain Complexed with Human-Civet Chimeric Receptor ACE2 within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Cl902 b:66.8 occ:1.00	NE	A:ARG169	3.2	59.4	1.0
	NH1	A:ARG169	3.5	58.0	1.0
	CB	A:ASP499	3.5	60.6	1.0
	NE1	A:TRP477	3.6	58.5	1.0
	NZ	A:LYS481	3.7	62.4	1.0
	CZ	A:ARG169	3.8	58.5	1.0
	CZ2	A:TRP478	3.9	62.3	1.0
	O	A:ASP499	4.0	59.5	1.0
	CH2	A:TRP478	4.1	62.7	1.0
	CZ2	A:TRP477	4.1	58.4	1.0
	C	A:ASP499	4.2	59.4	1.0
	CE2	A:TRP477	4.2	58.3	1.0
	CD	A:ARG169	4.2	61.1	1.0
	CG	A:ASP499	4.3	60.3	1.0
	CA	A:ASP499	4.4	60.5	1.0
	CZ2	A:TRP165	4.4	48.3	1.0
	OD1	A:ASP499	4.7	60.2	1.0
	CD1	A:TRP477	4.7	58.9	1.0
	N	A:PRO500	4.8	58.4	1.0
	CE2	A:TRP478	4.8	62.4	1.0
	OD2	A:ASP499	4.9	59.6	1.0
	CD1	A:TRP271	4.9	50.4	1.0
	OG	A:SER502	5.0	50.1	1.0

Chlorine binding site 2 out of 2 in 3d0g

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Chlorine Binding Sites List in 3d0g

Chlorine binding site 2 out of 2 in the Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Human Strain Complexed with Human-Civet Chimeric Receptor ACE2

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Human Strain Complexed with Human-Civet Chimeric Receptor ACE2 within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
B:Cl902 b:53.9 occ:1.00	NH1	B:ARG169	3.2	56.7	1.0
	NE	B:ARG169	3.2	58.3	1.0
	CB	B:ASP499	3.4	62.3	1.0
	NE1	B:TRP477	3.5	51.9	1.0
	CZ	B:ARG169	3.7	56.6	1.0
	CZ2	B:TRP478	3.7	55.8	1.0
	CH2	B:TRP478	3.9	56.1	1.0
	CG	B:ASP499	4.2	62.4	1.0
	O	B:ASP499	4.2	62.3	1.0
	C	B:ASP499	4.3	62.3	1.0
	CE2	B:TRP477	4.3	51.2	1.0
	CZ2	B:TRP165	4.3	49.0	1.0
	CA	B:ASP499	4.4	62.4	1.0
	CZ2	B:TRP477	4.4	51.0	1.0
	CD	B:ARG169	4.4	60.2	1.0
	CD1	B:TRP477	4.5	51.8	1.0
	OD1	B:ASP499	4.6	62.4	1.0
	CE	B:LYS481	4.7	59.9	1.0
	CE2	B:TRP478	4.7	56.4	1.0
	N	B:PRO500	4.9	62.2	1.0
	CD1	B:TRP271	4.9	50.2	1.0
	NH2	B:ARG169	5.0	56.1	1.0
	OD2	B:ASP499	5.0	62.0	1.0
	CZ3	B:TRP478	5.0	56.3	1.0

Reference:

F.Li, F.Li. N/A N/A.
ISSN: ISSN 0022-538X
PubMed: 18448527
DOI: 10.1128/JVI.00442-08

Page generated: Sat Jul 20 17:56:59 2024

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