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Chlorine in PDB 3d0g: Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Human Strain Complexed with Human-Civet Chimeric Receptor ACE2

Enzymatic activity of Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Human Strain Complexed with Human-Civet Chimeric Receptor ACE2

All present enzymatic activity of Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Human Strain Complexed with Human-Civet Chimeric Receptor ACE2:
3.4.17.23;

Protein crystallography data

The structure of Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Human Strain Complexed with Human-Civet Chimeric Receptor ACE2, PDB code: 3d0g was solved by F.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.14 / 2.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 80.008, 119.762, 108.801, 90.00, 96.22, 90.00
R / Rfree (%) 21.4 / 27.9

Other elements in 3d0g:

The structure of Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Human Strain Complexed with Human-Civet Chimeric Receptor ACE2 also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Human Strain Complexed with Human-Civet Chimeric Receptor ACE2 (pdb code 3d0g). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Human Strain Complexed with Human-Civet Chimeric Receptor ACE2, PDB code: 3d0g:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3d0g

Go back to Chlorine Binding Sites List in 3d0g
Chlorine binding site 1 out of 2 in the Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Human Strain Complexed with Human-Civet Chimeric Receptor ACE2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Human Strain Complexed with Human-Civet Chimeric Receptor ACE2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl902

b:66.8
occ:1.00
 NE A:ARG169 3.2 59.4 1.0
NH1 A:ARG169 3.5 58.0 1.0
CB A:ASP499 3.5 60.6 1.0
NE1 A:TRP477 3.6 58.5 1.0
NZ A:LYS481 3.7 62.4 1.0
CZ A:ARG169 3.8 58.5 1.0
CZ2 A:TRP478 3.9 62.3 1.0
O A:ASP499 4.0 59.5 1.0
CH2 A:TRP478 4.1 62.7 1.0
CZ2 A:TRP477 4.1 58.4 1.0
C A:ASP499 4.2 59.4 1.0
CE2 A:TRP477 4.2 58.3 1.0
CD A:ARG169 4.2 61.1 1.0
CG A:ASP499 4.3 60.3 1.0
CA A:ASP499 4.4 60.5 1.0
CZ2 A:TRP165 4.4 48.3 1.0
OD1 A:ASP499 4.7 60.2 1.0
CD1 A:TRP477 4.7 58.9 1.0
N A:PRO500 4.8 58.4 1.0
CE2 A:TRP478 4.8 62.4 1.0
OD2 A:ASP499 4.9 59.6 1.0
CD1 A:TRP271 4.9 50.4 1.0
OG A:SER502 5.0 50.1 1.0

Chlorine binding site 2 out of 2 in 3d0g

Go back to Chlorine Binding Sites List in 3d0g
Chlorine binding site 2 out of 2 in the Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Human Strain Complexed with Human-Civet Chimeric Receptor ACE2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Human Strain Complexed with Human-Civet Chimeric Receptor ACE2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl902

b:53.9
occ:1.00
 NH1 B:ARG169 3.2 56.7 1.0
NE B:ARG169 3.2 58.3 1.0
CB B:ASP499 3.4 62.3 1.0
NE1 B:TRP477 3.5 51.9 1.0
CZ B:ARG169 3.7 56.6 1.0
CZ2 B:TRP478 3.7 55.8 1.0
CH2 B:TRP478 3.9 56.1 1.0
CG B:ASP499 4.2 62.4 1.0
O B:ASP499 4.2 62.3 1.0
C B:ASP499 4.3 62.3 1.0
CE2 B:TRP477 4.3 51.2 1.0
CZ2 B:TRP165 4.3 49.0 1.0
CA B:ASP499 4.4 62.4 1.0
CZ2 B:TRP477 4.4 51.0 1.0
CD B:ARG169 4.4 60.2 1.0
CD1 B:TRP477 4.5 51.8 1.0
OD1 B:ASP499 4.6 62.4 1.0
CE B:LYS481 4.7 59.9 1.0
CE2 B:TRP478 4.7 56.4 1.0
N B:PRO500 4.9 62.2 1.0
CD1 B:TRP271 4.9 50.2 1.0
NH2 B:ARG169 5.0 56.1 1.0
OD2 B:ASP499 5.0 62.0 1.0
CZ3 B:TRP478 5.0 56.3 1.0

Reference:

F.Li, F.Li. N/A N/A.
ISSN: ISSN 0022-538X
PubMed: 18448527
DOI: 10.1128/JVI.00442-08
Page generated: Sat Jul 20 17:56:59 2024

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