Chlorine in PDB 3qqw: Crystal Structure of A Putative Lyase (REUT_B4148) From Ralstonia Eutropha JMP134 at 2.44 A Resolution
Protein crystallography data
The structure of Crystal Structure of A Putative Lyase (REUT_B4148) From Ralstonia Eutropha JMP134 at 2.44 A Resolution, PDB code: 3qqw
was solved by
Joint Center For Structural Genomics (Jcsg),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.79 /
2.44
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
226.401,
73.826,
149.252,
90.00,
125.31,
90.00
|
R / Rfree (%)
|
20.2 /
23.1
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of A Putative Lyase (REUT_B4148) From Ralstonia Eutropha JMP134 at 2.44 A Resolution
(pdb code 3qqw). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 9 binding sites of Chlorine where determined in the
Crystal Structure of A Putative Lyase (REUT_B4148) From Ralstonia Eutropha JMP134 at 2.44 A Resolution, PDB code: 3qqw:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
Chlorine binding site 1 out
of 9 in 3qqw
Go back to
Chlorine Binding Sites List in 3qqw
Chlorine binding site 1 out
of 9 in the Crystal Structure of A Putative Lyase (REUT_B4148) From Ralstonia Eutropha JMP134 at 2.44 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of A Putative Lyase (REUT_B4148) From Ralstonia Eutropha JMP134 at 2.44 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl405
b:60.6
occ:1.00
|
N
|
A:MSE177
|
3.2
|
59.4
|
1.0
|
O
|
A:HOH450
|
3.5
|
58.5
|
1.0
|
CB
|
A:MSE177
|
3.6
|
69.7
|
1.0
|
N
|
A:LEU176
|
3.6
|
45.9
|
1.0
|
CB
|
A:ASN224
|
3.9
|
40.0
|
1.0
|
CB
|
A:LEU176
|
3.9
|
45.4
|
1.0
|
CA
|
A:MSE177
|
4.0
|
63.9
|
1.0
|
CA
|
A:LEU176
|
4.0
|
46.4
|
1.0
|
C
|
A:LEU176
|
4.1
|
57.6
|
1.0
|
C
|
A:GLY175
|
4.3
|
50.8
|
1.0
|
O
|
A:HOH513
|
4.3
|
48.2
|
1.0
|
O
|
A:HOH471
|
4.5
|
42.7
|
1.0
|
CA
|
A:GLY175
|
4.5
|
45.7
|
1.0
|
CG2
|
A:VAL225
|
4.7
|
43.2
|
1.0
|
CG
|
A:ASN224
|
4.9
|
62.9
|
1.0
|
CG
|
A:MSE177
|
4.9
|
83.5
|
1.0
|
CG
|
A:LEU176
|
4.9
|
49.0
|
1.0
|
CA
|
A:ASN224
|
4.9
|
40.5
|
1.0
|
|
Chlorine binding site 2 out
of 9 in 3qqw
Go back to
Chlorine Binding Sites List in 3qqw
Chlorine binding site 2 out
of 9 in the Crystal Structure of A Putative Lyase (REUT_B4148) From Ralstonia Eutropha JMP134 at 2.44 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of A Putative Lyase (REUT_B4148) From Ralstonia Eutropha JMP134 at 2.44 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl400
b:88.8
occ:1.00
|
NE
|
B:ARG158
|
3.6
|
40.4
|
1.0
|
NE2
|
B:GLN162
|
3.7
|
56.1
|
1.0
|
NH2
|
B:ARG158
|
3.7
|
44.2
|
1.0
|
CZ
|
B:ARG158
|
3.8
|
53.6
|
1.0
|
OD1
|
B:ASP159
|
4.0
|
57.0
|
1.0
|
O
|
B:ARG158
|
4.0
|
38.3
|
1.0
|
CD
|
B:ARG158
|
4.3
|
35.9
|
1.0
|
CG
|
B:ARG158
|
4.4
|
34.1
|
1.0
|
CD
|
B:GLN162
|
4.5
|
69.7
|
1.0
|
NH1
|
B:ARG158
|
4.6
|
42.3
|
1.0
|
C
|
B:ARG158
|
4.8
|
39.1
|
1.0
|
OE1
|
B:GLN162
|
5.0
|
63.4
|
1.0
|
|
Chlorine binding site 3 out
of 9 in 3qqw
Go back to
Chlorine Binding Sites List in 3qqw
Chlorine binding site 3 out
of 9 in the Crystal Structure of A Putative Lyase (REUT_B4148) From Ralstonia Eutropha JMP134 at 2.44 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of A Putative Lyase (REUT_B4148) From Ralstonia Eutropha JMP134 at 2.44 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl404
b:98.7
occ:1.00
|
N
|
B:ALA319
|
3.2
|
74.7
|
1.0
|
CB
|
B:MSE318
|
3.5
|
67.3
|
1.0
|
CE
|
B:MSE318
|
3.8
|
77.4
|
1.0
|
CA
|
B:MSE318
|
3.8
|
67.2
|
1.0
|
O
|
B:ALA319
|
3.9
|
86.0
|
1.0
|
CD1
|
B:PHE270
|
4.0
|
0.2
|
1.0
|
CG
|
B:MSE318
|
4.0
|
72.0
|
1.0
|
C
|
B:MSE318
|
4.0
|
74.7
|
1.0
|
CB
|
B:ALA319
|
4.0
|
80.6
|
1.0
|
CA
|
B:ALA319
|
4.1
|
77.0
|
1.0
|
CE1
|
B:PHE270
|
4.3
|
0.5
|
1.0
|
C
|
B:ALA319
|
4.5
|
84.4
|
1.0
|
SE
|
B:MSE318
|
4.8
|
77.5
|
0.8
|
|
Chlorine binding site 4 out
of 9 in 3qqw
Go back to
Chlorine Binding Sites List in 3qqw
Chlorine binding site 4 out
of 9 in the Crystal Structure of A Putative Lyase (REUT_B4148) From Ralstonia Eutropha JMP134 at 2.44 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of A Putative Lyase (REUT_B4148) From Ralstonia Eutropha JMP134 at 2.44 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl401
b:47.5
occ:1.00
|
NE
|
C:ARG72
|
3.1
|
48.9
|
1.0
|
NH2
|
C:ARG72
|
3.4
|
34.5
|
1.0
|
CZ
|
C:ARG72
|
3.7
|
55.3
|
1.0
|
CA
|
C:MSE69
|
3.8
|
36.3
|
1.0
|
N
|
C:MSE69
|
3.8
|
39.0
|
1.0
|
C
|
C:GLU68
|
3.9
|
43.9
|
1.0
|
O
|
C:GLU68
|
3.9
|
44.5
|
1.0
|
CD
|
C:ARG72
|
4.1
|
46.7
|
1.0
|
CB
|
C:GLU68
|
4.2
|
42.4
|
1.0
|
CB
|
C:MSE69
|
4.4
|
37.3
|
1.0
|
CB
|
C:ARG72
|
4.6
|
36.6
|
1.0
|
O
|
C:HOH552
|
4.7
|
43.8
|
1.0
|
CA
|
C:GLU68
|
4.7
|
39.5
|
1.0
|
O
|
C:GLU65
|
4.8
|
49.5
|
1.0
|
CG
|
C:ARG72
|
5.0
|
44.5
|
1.0
|
|
Chlorine binding site 5 out
of 9 in 3qqw
Go back to
Chlorine Binding Sites List in 3qqw
Chlorine binding site 5 out
of 9 in the Crystal Structure of A Putative Lyase (REUT_B4148) From Ralstonia Eutropha JMP134 at 2.44 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of A Putative Lyase (REUT_B4148) From Ralstonia Eutropha JMP134 at 2.44 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl406
b:56.7
occ:1.00
|
O
|
C:HOH565
|
2.9
|
38.5
|
1.0
|
N
|
C:MSE177
|
3.4
|
54.1
|
1.0
|
O
|
C:HOH441
|
3.4
|
47.1
|
1.0
|
N
|
C:LEU176
|
3.5
|
43.0
|
1.0
|
CB
|
C:MSE177
|
3.8
|
62.0
|
1.0
|
CB
|
C:ASN224
|
3.9
|
39.9
|
1.0
|
CB
|
C:LEU176
|
4.0
|
43.5
|
1.0
|
CA
|
C:LEU176
|
4.1
|
43.8
|
1.0
|
C
|
C:GLY175
|
4.1
|
44.1
|
1.0
|
CA
|
C:MSE177
|
4.2
|
57.0
|
1.0
|
C
|
C:LEU176
|
4.2
|
53.0
|
1.0
|
CA
|
C:GLY175
|
4.2
|
37.6
|
1.0
|
O
|
C:HOH442
|
4.5
|
44.1
|
1.0
|
O
|
C:PHE174
|
4.8
|
42.8
|
1.0
|
CA
|
C:ASN224
|
4.9
|
39.9
|
1.0
|
CG
|
C:ASN224
|
4.9
|
49.8
|
1.0
|
CG2
|
C:VAL225
|
4.9
|
44.4
|
1.0
|
|
Chlorine binding site 6 out
of 9 in 3qqw
Go back to
Chlorine Binding Sites List in 3qqw
Chlorine binding site 6 out
of 9 in the Crystal Structure of A Putative Lyase (REUT_B4148) From Ralstonia Eutropha JMP134 at 2.44 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Crystal Structure of A Putative Lyase (REUT_B4148) From Ralstonia Eutropha JMP134 at 2.44 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl402
b:62.1
occ:1.00
|
O
|
D:HOH702
|
2.9
|
54.8
|
1.0
|
O
|
D:HOH585
|
2.9
|
36.0
|
1.0
|
N
|
D:MSE177
|
3.5
|
53.5
|
1.0
|
N
|
D:LEU176
|
3.7
|
43.4
|
1.0
|
CB
|
D:ASN224
|
3.9
|
37.0
|
1.0
|
CB
|
D:MSE177
|
3.9
|
63.9
|
1.0
|
O
|
D:HOH462
|
4.0
|
40.8
|
1.0
|
CB
|
D:LEU176
|
4.2
|
43.4
|
1.0
|
CA
|
D:LEU176
|
4.3
|
43.9
|
1.0
|
C
|
D:GLY175
|
4.3
|
46.1
|
1.0
|
CA
|
D:MSE177
|
4.3
|
57.6
|
1.0
|
C
|
D:LEU176
|
4.4
|
51.7
|
1.0
|
CA
|
D:GLY175
|
4.4
|
40.4
|
1.0
|
O
|
D:HOH459
|
4.4
|
37.3
|
1.0
|
CG2
|
D:VAL225
|
4.5
|
42.8
|
1.0
|
CA
|
D:ASN224
|
4.8
|
37.9
|
1.0
|
N
|
D:VAL225
|
4.8
|
37.6
|
1.0
|
CE
|
D:MSE192
|
4.9
|
59.0
|
0.5
|
CG
|
D:ASN224
|
4.9
|
44.5
|
1.0
|
O
|
D:PHE174
|
4.9
|
48.2
|
1.0
|
|
Chlorine binding site 7 out
of 9 in 3qqw
Go back to
Chlorine Binding Sites List in 3qqw
Chlorine binding site 7 out
of 9 in the Crystal Structure of A Putative Lyase (REUT_B4148) From Ralstonia Eutropha JMP134 at 2.44 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of Crystal Structure of A Putative Lyase (REUT_B4148) From Ralstonia Eutropha JMP134 at 2.44 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cl403
b:81.6
occ:1.00
|
N
|
E:ALA319
|
3.4
|
52.3
|
1.0
|
CB
|
E:MSE318
|
3.8
|
41.4
|
1.0
|
CA
|
E:MSE318
|
3.8
|
41.0
|
1.0
|
CG
|
E:MSE318
|
4.0
|
44.4
|
1.0
|
CB
|
E:ALA319
|
4.1
|
57.7
|
1.0
|
C
|
E:MSE318
|
4.1
|
50.8
|
1.0
|
CA
|
E:ALA319
|
4.3
|
55.6
|
1.0
|
CE
|
E:MSE318
|
4.4
|
44.7
|
1.0
|
O
|
E:ALA319
|
4.6
|
67.9
|
1.0
|
CD2
|
E:PHE270
|
4.9
|
77.3
|
1.0
|
C
|
E:ALA319
|
5.0
|
65.6
|
1.0
|
|
Chlorine binding site 8 out
of 9 in 3qqw
Go back to
Chlorine Binding Sites List in 3qqw
Chlorine binding site 8 out
of 9 in the Crystal Structure of A Putative Lyase (REUT_B4148) From Ralstonia Eutropha JMP134 at 2.44 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 8 of Crystal Structure of A Putative Lyase (REUT_B4148) From Ralstonia Eutropha JMP134 at 2.44 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cl407
b:46.7
occ:1.00
|
O
|
E:HOH490
|
2.9
|
34.3
|
1.0
|
N
|
E:MSE177
|
3.3
|
44.7
|
1.0
|
O
|
E:HOH498
|
3.4
|
38.2
|
1.0
|
N
|
E:LEU176
|
3.5
|
32.3
|
1.0
|
CB
|
E:MSE177
|
3.7
|
54.1
|
1.0
|
CB
|
E:LEU176
|
4.0
|
31.6
|
1.0
|
CB
|
E:ASN224
|
4.0
|
27.6
|
1.0
|
CA
|
E:LEU176
|
4.1
|
33.1
|
1.0
|
CA
|
E:MSE177
|
4.1
|
48.6
|
1.0
|
C
|
E:GLY175
|
4.2
|
35.9
|
1.0
|
C
|
E:LEU176
|
4.2
|
44.2
|
1.0
|
CA
|
E:GLY175
|
4.4
|
29.9
|
1.0
|
O
|
E:HOH497
|
4.4
|
36.3
|
1.0
|
O
|
E:HOH491
|
4.5
|
37.9
|
1.0
|
O
|
E:PHE174
|
4.9
|
37.9
|
1.0
|
CG2
|
E:VAL225
|
4.9
|
34.0
|
1.0
|
CA
|
E:ASN224
|
5.0
|
33.0
|
1.0
|
O
|
E:HOH489
|
5.0
|
37.8
|
1.0
|
|
Chlorine binding site 9 out
of 9 in 3qqw
Go back to
Chlorine Binding Sites List in 3qqw
Chlorine binding site 9 out
of 9 in the Crystal Structure of A Putative Lyase (REUT_B4148) From Ralstonia Eutropha JMP134 at 2.44 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 9 of Crystal Structure of A Putative Lyase (REUT_B4148) From Ralstonia Eutropha JMP134 at 2.44 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Cl408
b:58.8
occ:1.00
|
N
|
F:MSE177
|
3.2
|
51.0
|
1.0
|
N
|
F:LEU176
|
3.4
|
44.0
|
1.0
|
CB
|
F:MSE177
|
3.6
|
60.0
|
1.0
|
CB
|
F:ASN224
|
3.9
|
33.6
|
1.0
|
CA
|
F:LEU176
|
4.0
|
44.3
|
1.0
|
CB
|
F:LEU176
|
4.0
|
44.7
|
1.0
|
CA
|
F:MSE177
|
4.0
|
54.2
|
1.0
|
C
|
F:GLY175
|
4.0
|
47.3
|
1.0
|
C
|
F:LEU176
|
4.0
|
50.6
|
1.0
|
CA
|
F:GLY175
|
4.3
|
40.6
|
1.0
|
O
|
F:HOH641
|
4.4
|
50.9
|
1.0
|
CG2
|
F:VAL225
|
4.8
|
48.2
|
1.0
|
O
|
F:PHE174
|
4.9
|
44.3
|
1.0
|
CG
|
F:ASN224
|
4.9
|
50.6
|
1.0
|
CA
|
F:ASN224
|
4.9
|
37.4
|
1.0
|
O
|
F:GLY175
|
4.9
|
48.5
|
1.0
|
CG
|
F:MSE177
|
5.0
|
74.2
|
1.0
|
|
Reference:
Joint Center For Structural Genomics (Jcsg),
Joint Center For Structural Genomics (Jcsg).
N/A N/A.
Page generated: Sun Jul 21 03:06:12 2024
|