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Chlorine in PDB 3re0: Crystal Structure of Human Apo Cu,Zn Superoxide Dismutase (SOD1) Complexed with Cisplatin

Enzymatic activity of Crystal Structure of Human Apo Cu,Zn Superoxide Dismutase (SOD1) Complexed with Cisplatin

All present enzymatic activity of Crystal Structure of Human Apo Cu,Zn Superoxide Dismutase (SOD1) Complexed with Cisplatin:
1.15.1.1;

Protein crystallography data

The structure of Crystal Structure of Human Apo Cu,Zn Superoxide Dismutase (SOD1) Complexed with Cisplatin, PDB code: 3re0 was solved by I.Bertini, O.Blazevits, V.Calderone, M.Jaifei, M.Vieru, I.Amori, M.Cozzolino, M.T.Carri, L.Banci, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.32 / 2.28
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 157.412, 34.805, 115.225, 90.00, 112.28, 90.00
R / Rfree (%) 20.9 / 29

Other elements in 3re0:

The structure of Crystal Structure of Human Apo Cu,Zn Superoxide Dismutase (SOD1) Complexed with Cisplatin also contains other interesting chemical elements:

Platinum (Pt) 5 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Human Apo Cu,Zn Superoxide Dismutase (SOD1) Complexed with Cisplatin (pdb code 3re0). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Crystal Structure of Human Apo Cu,Zn Superoxide Dismutase (SOD1) Complexed with Cisplatin, PDB code: 3re0:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 3re0

Go back to Chlorine Binding Sites List in 3re0
Chlorine binding site 1 out of 5 in the Crystal Structure of Human Apo Cu,Zn Superoxide Dismutase (SOD1) Complexed with Cisplatin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human Apo Cu,Zn Superoxide Dismutase (SOD1) Complexed with Cisplatin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl201

b:59.7
occ:0.40
 CL2 B:CPT201 0.0 59.7 0.4
PT1 B:CPT201 2.4 54.2 0.4
N2 B:CPT201 3.1 56.6 0.4
SG A:CYS111 3.7 50.3 1.0
CB A:CYS111 3.7 45.0 1.0
CD1 B:ILE151 3.8 44.4 1.0
O A:ILE113 3.9 25.8 1.0
CL2 B:CPT201 4.2 53.7 0.4
N2 B:CPT201 4.3 66.6 0.4
O A:CYS111 4.4 33.3 1.0
N1 B:CPT201 4.4 46.2 0.4
C A:CYS111 4.8 32.5 1.0
CA A:CYS111 4.9 40.1 1.0
C A:ILE113 5.0 26.8 1.0

Chlorine binding site 2 out of 5 in 3re0

Go back to Chlorine Binding Sites List in 3re0
Chlorine binding site 2 out of 5 in the Crystal Structure of Human Apo Cu,Zn Superoxide Dismutase (SOD1) Complexed with Cisplatin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Human Apo Cu,Zn Superoxide Dismutase (SOD1) Complexed with Cisplatin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl201

b:53.7
occ:0.40
 CL2 B:CPT201 0.0 53.7 0.4
PT1 B:CPT201 2.4 72.5 0.4
SG B:CYS111 2.8 43.4 1.0
N2 B:CPT201 3.0 56.6 0.4
N2 B:CPT201 3.2 66.6 0.4
O B:LEU106 3.5 45.0 1.0
CL2 B:CPT201 4.2 59.7 0.4
CB B:CYS111 4.3 44.2 1.0
PT1 B:CPT201 4.3 54.2 0.4
CA B:SER107 4.3 44.3 1.0
CB B:ILE113 4.4 27.4 1.0
CD1 B:ILE113 4.4 26.6 1.0
C B:LEU106 4.4 36.4 1.0
N1 B:CPT201 4.4 59.4 0.4
CG2 B:ILE113 4.7 26.2 1.0
N B:GLY108 4.8 58.0 1.0
N B:SER107 4.8 43.1 1.0
C B:SER107 5.0 49.7 1.0
CG1 B:ILE113 5.0 26.9 1.0

Chlorine binding site 3 out of 5 in 3re0

Go back to Chlorine Binding Sites List in 3re0
Chlorine binding site 3 out of 5 in the Crystal Structure of Human Apo Cu,Zn Superoxide Dismutase (SOD1) Complexed with Cisplatin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Human Apo Cu,Zn Superoxide Dismutase (SOD1) Complexed with Cisplatin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl202

b:63.9
occ:0.60
 CL2 B:CPT202 0.0 63.9 0.6
PT1 B:CPT202 2.4 82.6 0.6
N2 B:CPT202 3.1 80.5 0.6
OD2 B:ASP109 4.3 86.6 1.0
CG B:ASP109 4.4 91.2 1.0
N1 B:CPT202 4.5 69.7 0.6
CB B:ASP109 4.7 82.2 1.0
OD1 B:ASP109 4.8 94.6 1.0

Chlorine binding site 4 out of 5 in 3re0

Go back to Chlorine Binding Sites List in 3re0
Chlorine binding site 4 out of 5 in the Crystal Structure of Human Apo Cu,Zn Superoxide Dismutase (SOD1) Complexed with Cisplatin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Human Apo Cu,Zn Superoxide Dismutase (SOD1) Complexed with Cisplatin within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl201

b:37.4
occ:0.40
 CL2 C:CPT201 0.0 37.4 0.4
PT1 C:CPT201 2.4 55.4 0.4
N2 C:CPT201 2.8 67.3 0.4
SG C:CYS111 3.0 52.6 1.0
N2 C:CPT201 3.2 48.5 0.4
CD1 C:ILE113 3.8 46.3 1.0
O C:LEU106 3.8 40.2 1.0
CA C:SER107 4.1 43.9 1.0
CB C:CYS111 4.3 46.9 1.0
N1 C:CPT201 4.4 46.0 0.4
CB C:ILE113 4.5 41.6 1.0
CB C:SER107 4.5 49.0 1.0
PT1 C:CPT201 4.6 72.7 0.4
C C:LEU106 4.6 41.7 1.0
CG1 C:ILE113 4.7 41.6 1.0
CL2 C:CPT201 4.8 57.9 0.4
N C:SER107 4.8 43.9 1.0
N C:GLY108 4.9 51.2 1.0
C C:SER107 4.9 45.3 1.0
CG2 C:ILE113 4.9 34.8 1.0

Chlorine binding site 5 out of 5 in 3re0

Go back to Chlorine Binding Sites List in 3re0
Chlorine binding site 5 out of 5 in the Crystal Structure of Human Apo Cu,Zn Superoxide Dismutase (SOD1) Complexed with Cisplatin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Human Apo Cu,Zn Superoxide Dismutase (SOD1) Complexed with Cisplatin within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl201

b:57.9
occ:0.40
 CL2 C:CPT201 0.0 57.9 0.4
PT1 C:CPT201 2.4 72.7 0.4
CB D:CYS111 3.0 43.1 1.0
SG D:CYS111 3.1 50.2 1.0
N2 C:CPT201 3.2 67.3 0.4
O D:ILE113 3.7 32.9 1.0
O D:CYS111 3.9 39.2 1.0
C D:CYS111 4.1 37.4 1.0
CA D:CYS111 4.2 42.8 1.0
CD1 C:ILE151 4.4 35.9 1.0
N1 C:CPT201 4.5 56.4 0.4
C D:ILE113 4.7 32.4 1.0
N D:ILE113 4.8 34.5 1.0
N D:ILE112 4.8 35.1 1.0
CL2 C:CPT201 4.8 37.4 0.4
N2 C:CPT201 4.9 48.5 0.4
NH2 D:ARG115 5.0 30.3 1.0

Reference:

L.Banci, I.Bertini, O.Blazevits, V.Calderone, F.Cantini, J.Mao, A.Trapananti, M.Vieru, I.Amori, M.Cozzolino, M.T.Carri. Interaction of Cisplatin with Human Superoxide Dismutase. J.Am.Chem.Soc. V. 134 7009 2012.
ISSN: ISSN 0002-7863
PubMed: 22471402
DOI: 10.1021/JA211591N
Page generated: Sun Jul 21 03:37:59 2024

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