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Chlorine in PDB 4b6z: Crystal Structure of Metallo-Carboxypeptidase From Burkholderia Cenocepacia

Protein crystallography data

The structure of Crystal Structure of Metallo-Carboxypeptidase From Burkholderia Cenocepacia, PDB code: 4b6z was solved by V.Rimsa, T.C.Eadsforth, R.P.Joosten, W.N.Hunter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 62.897, 85.947, 289.016, 90.00, 90.00, 90.00
R / Rfree (%) 16.439 / 20.455

Other elements in 4b6z:

The structure of Crystal Structure of Metallo-Carboxypeptidase From Burkholderia Cenocepacia also contains other interesting chemical elements:

Zinc (Zn) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Metallo-Carboxypeptidase From Burkholderia Cenocepacia (pdb code 4b6z). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Metallo-Carboxypeptidase From Burkholderia Cenocepacia, PDB code: 4b6z:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 4b6z

Go back to Chlorine Binding Sites List in 4b6z
Chlorine binding site 1 out of 3 in the Crystal Structure of Metallo-Carboxypeptidase From Burkholderia Cenocepacia


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Metallo-Carboxypeptidase From Burkholderia Cenocepacia within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1389

b:44.4
occ:1.00
NH2 B:ARG34 3.7 15.9 1.0
ND2 B:ASN33 3.7 11.7 1.0
CE1 B:HIS222 3.8 10.4 1.0
CB B:ASN33 4.3 11.1 1.0
NH1 C:ARG28 4.4 15.1 1.0
CG B:ASN33 4.5 11.1 1.0
ND1 B:HIS222 4.6 10.1 1.0
CZ B:ARG34 4.7 16.7 1.0
NE B:ARG34 4.8 16.1 1.0
NE2 B:HIS222 4.8 10.3 1.0
O B:HOH2015 4.9 23.2 1.0
O B:ASN33 4.9 11.9 1.0
O B:HOH2037 4.9 17.5 1.0

Chlorine binding site 2 out of 3 in 4b6z

Go back to Chlorine Binding Sites List in 4b6z
Chlorine binding site 2 out of 3 in the Crystal Structure of Metallo-Carboxypeptidase From Burkholderia Cenocepacia


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Metallo-Carboxypeptidase From Burkholderia Cenocepacia within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl1389

b:54.5
occ:1.00
NH2 C:ARG139 3.6 21.6 1.0
NE C:ARG139 3.6 20.5 1.0
O C:HOH2161 3.7 22.2 1.0
O C:HOH2064 3.9 38.5 1.0
CZ C:ARG139 4.1 21.0 1.0
O C:HOH2164 4.3 35.0 1.0
CB C:ARG139 4.6 17.0 1.0
O C:HOH2163 4.7 36.2 1.0
CD C:ARG139 4.8 17.8 1.0
CG C:ARG139 4.8 18.7 1.0

Chlorine binding site 3 out of 3 in 4b6z

Go back to Chlorine Binding Sites List in 4b6z
Chlorine binding site 3 out of 3 in the Crystal Structure of Metallo-Carboxypeptidase From Burkholderia Cenocepacia


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Metallo-Carboxypeptidase From Burkholderia Cenocepacia within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl1999

b:55.8
occ:1.00
O D:GLN335 3.9 16.3 1.0
CE2 D:PHE336 4.0 18.2 1.0
CD2 D:PHE336 4.2 17.6 1.0
ND1 D:HIS257 4.2 17.5 1.0
CZ D:PHE336 4.4 17.9 1.0
CE1 D:HIS257 4.4 16.0 1.0
C D:GLN335 4.7 16.5 1.0
CG D:PHE336 4.8 17.6 1.0
OE1 D:GLN335 4.8 30.0 1.0
CE1 D:PHE336 4.9 18.2 1.0

Reference:

V.Rimsa, T.C.Eadsforth, R.P.Joosten, W.N.Hunter. High-Resolution Structure of the M14-Type Cytosolic Carboxypeptidase From Burkholderia Cenocepacia Refined Exploiting PDB_REDO Strategies. Acta Crystallogr.,Sect.D V. 70 279 2014.
ISSN: ISSN 0907-4449
PubMed: 24531462
DOI: 10.1107/S1399004713026801
Page generated: Sat Dec 12 10:25:34 2020

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