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Chlorine in PDB 5g3s: The Structure of the L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum - Samarium Derivative

Enzymatic activity of The Structure of the L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum - Samarium Derivative

All present enzymatic activity of The Structure of the L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum - Samarium Derivative:
1.4.3.23;

Protein crystallography data

The structure of The Structure of the L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum - Samarium Derivative, PDB code: 5g3s was solved by J.Krausze, J.Rabe, J.Moser, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.98 / 2.08
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 67.880, 87.070, 78.020, 90.00, 112.95, 90.00
R / Rfree (%) 16.5 / 18.8

Other elements in 5g3s:

The structure of The Structure of the L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum - Samarium Derivative also contains other interesting chemical elements:

Mercury (Hg) 12 atoms
Samarium (Sm) 11 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The Structure of the L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum - Samarium Derivative (pdb code 5g3s). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the The Structure of the L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum - Samarium Derivative, PDB code: 5g3s:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 5g3s

Go back to Chlorine Binding Sites List in 5g3s
Chlorine binding site 1 out of 3 in the The Structure of the L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum - Samarium Derivative


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Structure of the L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum - Samarium Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl436

b:23.8
occ:1.00
 H A:HIS361 2.4 26.1 1.0
HE3 A:TRP359 2.9 21.2 1.0
SM A:SM421 2.9 29.7 1.0
HB3 A:TRP359 3.0 21.2 1.0
HN3 A:TRS438 3.2 30.0 1.0
N A:HIS361 3.2 21.7 1.0
HB2 A:HIS361 3.3 28.8 1.0
O A:HOH2160 3.4 29.6 1.0
HA A:TRP359 3.5 23.0 1.0
HN1 A:TRS438 3.5 30.0 1.0
C A:HIS361 3.6 22.6 1.0
H A:ALA360 3.6 19.6 1.0
O A:HIS361 3.7 22.4 1.0
N A:ALA360 3.7 16.4 1.0
N A:TRS438 3.7 25.0 1.0
CA A:HIS361 3.7 23.7 1.0
CB A:TRP359 3.8 17.7 1.0
O3 A:NO3435 3.8 26.7 1.0
HN2 A:TRS438 3.8 30.0 1.0
CE3 A:TRP359 3.8 17.7 1.0
O A:HOH2159 3.8 23.8 1.0
C A:TRP359 3.9 19.1 1.0
CA A:TRP359 3.9 19.2 1.0
HA2 A:GLY362 3.9 20.2 1.0
HD3 A:ARG46 3.9 22.8 1.0
CB A:HIS361 4.0 24.0 1.0
N A:GLY362 4.0 16.6 1.0
HB1 A:ALA360 4.2 20.7 1.0
C A:ALA360 4.3 18.0 1.0
H A:GLY362 4.4 20.0 1.0
HG2 A:ARG46 4.4 23.3 1.0
O2 A:NO3434 4.4 54.3 1.0
HB2 A:TRP359 4.4 21.2 1.0
ND1 A:HIS361 4.4 24.8 1.0
CA A:ALA360 4.5 17.1 1.0
CA A:GLY362 4.5 16.9 1.0
CD2 A:TRP359 4.5 17.8 1.0
O A:TRP359 4.6 19.0 1.0
CG A:TRP359 4.6 17.9 1.0
HA A:HIS361 4.7 28.4 1.0
CG A:HIS361 4.7 25.5 1.0
HB3 A:HIS361 4.7 28.8 1.0
HZ3 A:TRP359 4.7 22.3 1.0
CD A:ARG46 4.8 19.0 1.0
CZ3 A:TRP359 4.8 18.6 1.0
CB A:ALA360 4.8 17.2 1.0
HG3 A:ARG46 4.9 23.3 1.0
CG A:ARG46 4.9 19.4 1.0
O A:HOH2186 5.0 24.4 1.0
H22 A:TRS438 5.0 34.2 1.0
N A:NO3435 5.0 27.0 1.0

Chlorine binding site 2 out of 3 in 5g3s

Go back to Chlorine Binding Sites List in 5g3s
Chlorine binding site 2 out of 3 in the The Structure of the L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum - Samarium Derivative


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The Structure of the L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum - Samarium Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl437

b:42.1
occ:1.00
 SM A:SM420 2.7 35.0 1.0
HE22 A:GLN129 3.2 41.9 1.0
HZ1 A:LYS101 3.7 29.5 1.0
HE1 A:HIS97 3.7 26.8 1.0
HD3 A:LYS101 3.7 29.3 1.0
NE2 A:HIS97 4.0 21.2 1.0
NE2 A:GLN129 4.0 34.9 1.0
HD2 A:LYS101 4.1 29.3 1.0
CE1 A:HIS97 4.2 22.4 1.0
HZ3 A:LYS101 4.2 29.5 1.0
NZ A:LYS101 4.3 24.6 1.0
OE1 A:GLN129 4.3 35.0 1.0
CD A:LYS101 4.4 24.4 1.0
O A:HOH2181 4.5 31.1 1.0
HE21 A:GLN129 4.6 41.9 1.0
CD A:GLN129 4.6 34.4 1.0
CE A:LYS101 5.0 24.1 1.0

Chlorine binding site 3 out of 3 in 5g3s

Go back to Chlorine Binding Sites List in 5g3s
Chlorine binding site 3 out of 3 in the The Structure of the L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum - Samarium Derivative


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of The Structure of the L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum - Samarium Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl432

b:23.3
occ:1.00
 H B:HIS361 2.3 26.7 1.0
HN2 B:TRS433 2.5 45.5 1.0
SM B:SM420 2.9 35.2 1.0
HB3 B:TRP359 3.0 19.9 1.0
HE3 B:TRP359 3.0 20.2 1.0
N B:HIS361 3.1 22.2 1.0
HB2 B:HIS361 3.2 27.2 1.0
O B:HOH2029 3.3 38.5 1.0
N B:TRS433 3.4 37.9 1.0
O B:HOH2195 3.5 42.0 1.0
C B:HIS361 3.5 21.9 1.0
H B:ALA360 3.5 22.8 1.0
HN3 B:TRS433 3.6 45.5 1.0
HA B:TRP359 3.6 22.0 1.0
O A:HOH2123 3.6 23.9 1.0
O B:HIS361 3.6 22.1 1.0
CA B:HIS361 3.6 22.7 1.0
HN1 B:TRS433 3.7 45.5 1.0
N B:ALA360 3.7 19.0 1.0
HA2 B:GLY362 3.8 24.1 1.0
CB B:HIS361 3.8 22.6 1.0
CB B:TRP359 3.9 16.6 1.0
HD3 B:ARG46 3.9 24.2 1.0
O3 B:NO3431 3.9 29.5 1.0
N B:GLY362 3.9 21.6 1.0
C B:TRP359 3.9 20.2 1.0
CE3 B:TRP359 4.0 16.9 1.0
CA B:TRP359 4.0 18.3 1.0
H32 B:TRS433 4.0 45.5 1.0
HB1 B:ALA360 4.2 24.1 1.0
C B:ALA360 4.2 20.4 1.0
H B:GLY362 4.3 25.9 1.0
ND1 B:HIS361 4.4 24.8 1.0
CA B:GLY362 4.4 20.0 1.0
HG2 B:ARG46 4.4 24.4 1.0
CA B:ALA360 4.4 19.6 1.0
HB2 B:TRP359 4.5 19.9 1.0
CG B:HIS361 4.6 24.2 1.0
HA B:HIS361 4.6 27.3 1.0
HB3 B:HIS361 4.6 27.2 1.0
C B:TRS433 4.6 35.9 1.0
O B:TRP359 4.7 21.6 1.0
CD2 B:TRP359 4.7 15.6 1.0
H22 B:TRS433 4.7 43.7 1.0
CG B:TRP359 4.7 15.5 1.0
CD B:ARG46 4.7 20.2 1.0
HG3 B:ARG46 4.8 24.4 1.0
C3 B:TRS433 4.8 37.9 1.0
CB B:ALA360 4.9 20.1 1.0
O2 B:NO3430 4.9 53.0 1.0
HZ3 B:TRP359 4.9 20.9 1.0
CG B:ARG46 4.9 20.3 1.0
CZ3 B:TRP359 4.9 17.4 1.0
HA3 B:GLY362 5.0 24.1 1.0

Reference:

J.Fuller, R.Roepke, J.Krausze, K.E.Rennhack, N.P.Daniel, W.Blankenfeldt, S.Schulz, D.Jahn, J.Moser. Biosynthesis of Violacein: Structure and Function of L-Tryptophan Oxidase Vioa Chromobacterium Violaceum J.Biol.Chem. V. 291 20068 2016.
ISSN: ISSN 0021-9258
PubMed: 27466367
DOI: 10.1074/JBC.M116.741561
Page generated: Fri Jul 26 08:19:28 2024

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