Chlorine in PDB 5ltj: Crystal Structure of the PRP43-Adp-BEF3 Complex (in Orthorhombic Space Group)

The structure of Crystal Structure of the PRP43-Adp-BEF3 Complex (in Orthorhombic Space Group), PDB code: 5ltj was solved by M.J.Tauchert, R.Ficner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	67.99 / 1.78
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	88.826, 105.637, 119.050, 90.00, 90.00, 90.00
R / Rfree (%)	17.7 / 19.9

The structure of Crystal Structure of the PRP43-Adp-BEF3 Complex (in Orthorhombic Space Group) also contains other interesting chemical elements:

Fluorine	(F)	3 atoms
Magnesium	(Mg)	1 atom

The binding sites of Chlorine atom in the Crystal Structure of the PRP43-Adp-BEF3 Complex (in Orthorhombic Space Group) (pdb code 5ltj). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of the PRP43-Adp-BEF3 Complex (in Orthorhombic Space Group), PDB code: 5ltj:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in the Crystal Structure of the PRP43-Adp-BEF3 Complex (in Orthorhombic Space Group)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the PRP43-Adp-BEF3 Complex (in Orthorhombic Space Group) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl813 b:33.8 occ:1.00 OG1 A:THR195 3.0 28.0 1.0 O A:HOH1331 3.3 53.2 1.0 N A:ARG180 3.4 33.6 0.5 CD A:ARG153 3.4 44.3 1.0 NH2 A:ARG201 3.4 39.3 1.0 N A:ARG180 3.5 34.0 0.5 CG A:ARG153 3.6 27.4 1.0 CG2 A:THR195 3.8 25.4 1.0 CB A:ARG180 3.8 34.6 0.5 CB A:ARG180 3.9 36.5 0.5 CB A:THR195 3.9 30.0 1.0 CB A:ILE179 4.1 29.6 0.5 CB A:ILE179 4.1 31.4 0.5 CA A:ILE179 4.1 30.4 0.5 CA A:ILE179 4.1 30.4 0.5 CA A:ARG180 4.2 35.5 0.5 CA A:ARG180 4.2 34.3 0.5 C A:ILE179 4.2 31.2 0.5 C A:ILE179 4.3 31.1 0.5 CZ A:ARG201 4.5 44.4 1.0 CG2 A:ILE179 4.6 31.3 0.5 CG2 A:ILE179 4.6 27.5 0.5 NH1 A:ARG201 4.7 46.9 1.0 NE A:ARG153 4.8 47.5 1.0 CB A:GLN198 4.8 29.8 1.0 N A:GLN198 4.8 29.8 1.0 OE1 A:GLN198 4.9 49.1 1.0 CB A:ARG153 5.0 30.6 1.0 O A:HOH1288 5.0 43.1 1.0

Chlorine binding site 2 out of 4 in the Crystal Structure of the PRP43-Adp-BEF3 Complex (in Orthorhombic Space Group)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the PRP43-Adp-BEF3 Complex (in Orthorhombic Space Group) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl814 b:87.8 occ:1.00 O A:HOH1183 3.7 37.8 1.0 O A:VAL344 3.8 31.3 1.0 NH1 A:ARG358 4.2 64.9 1.0 CE2 A:TYR345 4.3 40.0 1.0 O A:HOH1485 4.4 56.1 1.0 CZ A:TYR345 4.4 31.3 1.0 CD2 A:TYR345 4.7 37.5 1.0 OH A:TYR345 4.7 34.1 1.0 N A:VAL344 4.7 25.1 1.0 C A:VAL344 4.7 30.2 1.0 CE1 A:TYR345 4.8 30.4 1.0 CB A:SER343 4.9 31.6 0.3 CB A:SER343 4.9 31.9 0.7 CZ A:ARG358 4.9 65.2 1.0 NH2 A:ARG358 5.0 62.8 1.0 O A:HOH1048 5.0 50.8 1.0

Chlorine binding site 3 out of 4 in the Crystal Structure of the PRP43-Adp-BEF3 Complex (in Orthorhombic Space Group)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of the PRP43-Adp-BEF3 Complex (in Orthorhombic Space Group) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl815 b:46.5 occ:1.00 OG1 A:THR381 3.0 21.3 1.0 N A:GLY349 3.4 32.4 1.0 O A:HOH1496 3.4 41.6 1.0 O A:HOH1121 3.6 34.7 1.0 CB A:THR381 3.8 19.0 1.0 CG2 A:THR381 3.9 21.2 1.0 O A:HOH902 3.9 54.8 1.0 CA A:GLY349 4.0 33.7 1.0 NH1 A:ARG152 4.3 37.0 1.0 CA A:TYR348 4.3 25.3 1.0 C A:TYR348 4.3 26.7 1.0 CB A:TYR348 4.4 28.2 1.0 CB A:ILE383 4.5 24.9 1.0 OD1 A:ASN382 5.0 32.7 1.0

Chlorine binding site 4 out of 4 in the Crystal Structure of the PRP43-Adp-BEF3 Complex (in Orthorhombic Space Group)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of the PRP43-Adp-BEF3 Complex (in Orthorhombic Space Group) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl816 b:35.8 occ:0.69 O A:HOH1481 2.4 54.4 1.0 NH1 A:ARG153 3.0 81.4 1.0 N A:ARG153 3.3 22.2 1.0 O A:HOH1360 3.5 28.3 1.0 CG A:ARG153 3.5 27.4 1.0 O A:HOH941 3.7 42.9 1.0 CA A:ARG152 3.7 24.7 1.0 CZ A:ARG153 3.9 70.7 1.0 O A:HOH902 3.9 54.8 1.0 O A:HOH1524 3.9 62.4 1.0 CD A:ARG152 4.0 34.3 1.0 CB A:ARG152 4.0 23.0 1.0 C A:ARG152 4.0 22.6 1.0 CB A:ARG153 4.0 30.6 1.0 CA A:ARG153 4.3 30.6 1.0 CD A:ARG153 4.3 44.3 1.0 NE A:ARG153 4.4 47.5 1.0 O A:PRO151 4.5 26.2 1.0 CG A:ARG152 4.6 25.0 1.0 NH2 A:ARG153 4.7 67.3 1.0 N A:ARG152 4.9 23.8 1.0

M.J.Tauchert, J.B.Fourmann, R.Luhrmann, R.Ficner. Structural Insights Into the Mechanism of the Deah-Box Rna Helicase PRP43. Elife V. 6 2017.
ISSN: ESSN 2050-084X
PubMed: 28092261
DOI: 10.7554/ELIFE.21510