Chlorine in PDB 6o8g: Crystal Structure of Uvrb Bound to Fully Duplex Dna

Protein crystallography data

The structure of Crystal Structure of Uvrb Bound to Fully Duplex Dna, PDB code: 6o8g was solved by S.-J.Lee, R.-J.Sung, G.L.Verdine, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.24 / 2.64
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 170.685, 201.181, 62.664, 90.00, 90.00, 90.00
R / Rfree (%) 22 / 27.4

Other elements in 6o8g:

The structure of Crystal Structure of Uvrb Bound to Fully Duplex Dna also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Uvrb Bound to Fully Duplex Dna (pdb code 6o8g). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Uvrb Bound to Fully Duplex Dna, PDB code: 6o8g:

Chlorine binding site 1 out of 1 in 6o8g

Go back to Chlorine Binding Sites List in 6o8g
Chlorine binding site 1 out of 1 in the Crystal Structure of Uvrb Bound to Fully Duplex Dna


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Uvrb Bound to Fully Duplex Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl602

b:0.9
occ:1.00
ND1 B:HIS240 3.0 70.0 1.0
O A:HOH718 3.3 59.4 1.0
O B:HOH703 3.3 65.3 1.0
CB B:HIS240 3.4 64.8 1.0
OG B:SER160 3.5 66.1 1.0
CG B:HIS240 3.5 67.8 1.0
N B:VAL241 3.9 60.6 1.0
CE1 B:HIS240 4.1 68.8 1.0
O B:VAL241 4.1 61.6 1.0
C B:VAL241 4.1 58.2 1.0
C B:HIS240 4.2 60.9 1.0
O B:LEU161 4.3 50.8 1.0
CA B:VAL241 4.4 60.4 1.0
CA B:HIS240 4.4 63.4 1.0
N B:ALA242 4.5 55.4 1.0
CB B:ALA242 4.6 56.4 1.0
CD2 B:HIS240 4.7 67.2 1.0
CB B:SER160 4.9 58.8 1.0
O B:HIS240 4.9 60.6 1.0
CA B:ALA242 4.9 55.7 1.0
NE2 B:HIS240 5.0 67.8 1.0
N B:LEU161 5.0 55.3 1.0

Reference:

S.J.Lee, R.J.Sung, G.L.Verdine. Mechanism of Dna Lesion Homing and Recognition By the Uvr Nucleotide Excision Repair System. Res V.2019 41746 2019.
ISSN: ESSN 2639-5274
PubMed: 31549070
DOI: 10.34133/2019/5641746
Page generated: Sat Dec 12 13:26:21 2020

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