Chlorine in PDB 6z7r: Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1

Enzymatic activity of Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1

All present enzymatic activity of Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1:
1.12.7.2;

Protein crystallography data

The structure of Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1, PDB code: 6z7r was solved by S.Zacarias, A.Temporao, P.Carpentier, P.Van Der Linden, I.A.C.Pereira, P.M.Matias, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 58.05 / 1.77
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 75.125, 93.686, 98.433, 90.00, 93.26, 90.00
R / Rfree (%) 18.8 / 24.2

Other elements in 6z7r:

The structure of Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1 also contains other interesting chemical elements:

Nickel (Ni) 2 atoms
Krypton (Kr) 42 atoms
Iron (Fe) 36 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1 (pdb code 6z7r). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1, PDB code: 6z7r:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6z7r

Go back to Chlorine Binding Sites List in 6z7r
Chlorine binding site 1 out of 2 in the Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl505

b:17.3
occ:1.00
HG1 B:THR80 2.2 22.6 1.0
HD22 B:ASN113 2.2 22.7 1.0
H B:ALA81 2.6 16.9 1.0
HE1 B:PHE110 2.7 24.8 1.0
HA B:CYS78 2.8 18.0 1.0
OG1 B:THR80 3.0 18.7 1.0
HB2 B:ALA81 3.0 13.6 1.0
ND2 B:ASN113 3.0 18.8 1.0
HB2 B:CYS78 3.0 11.9 1.0
HD2 B:PRO421 3.1 24.9 1.0
HG2 B:PRO421 3.1 16.5 1.0
HD3 B:PRO421 3.2 24.9 1.0
N B:ALA81 3.2 14.0 1.0
CD B:PRO421 3.4 20.6 1.0
HB3 B:ASN113 3.4 29.8 1.0
CA B:CYS78 3.4 14.9 1.0
HD21 B:ASN113 3.4 22.7 1.0
CE1 B:PHE110 3.6 20.5 1.0
H B:THR80 3.6 16.7 1.0
C B:CYS78 3.6 10.3 1.0
CG B:PRO421 3.6 13.7 1.0
O B:CYS78 3.7 12.8 1.0
CB B:CYS78 3.7 9.8 1.0
CB B:ALA81 3.7 11.2 1.0
HB3 B:ALA81 3.7 13.6 1.0
HD1 B:PHE110 3.8 29.2 1.0
HG3 B:PRO421 3.9 16.5 1.0
N B:THR80 4.0 13.8 1.0
CB B:THR80 4.0 14.8 1.0
C B:THR80 4.0 13.4 1.0
CA B:ALA81 4.0 12.5 1.0
CG B:ASN113 4.1 20.8 1.0
HB3 B:CYS78 4.1 11.9 1.0
CD1 B:PHE110 4.1 24.2 1.0
CB B:ASN113 4.2 24.7 1.0
CA B:THR80 4.2 13.3 1.0
HB B:THR80 4.2 17.9 1.0
HA B:ALA81 4.3 15.1 1.0
N B:PRO79 4.4 17.1 1.0
HD2 B:PRO79 4.4 19.2 1.0
HB1 B:ALA81 4.6 13.6 1.0
O B:VAL77 4.6 12.6 1.0
CZ B:PHE110 4.6 18.6 1.0
HB2 B:ASN113 4.6 29.8 1.0
HA B:ALA420 4.6 11.0 1.0
HZ B:PHE110 4.6 22.5 1.0
N B:CYS78 4.7 16.9 1.0
HB1 B:ALA420 4.8 19.4 1.0
C B:PRO79 4.8 10.9 1.0
N B:PRO421 4.9 17.5 1.0
HE1 B:MET183 4.9 25.8 1.0
CD B:PRO79 5.0 15.9 1.0

Chlorine binding site 2 out of 2 in 6z7r

Go back to Chlorine Binding Sites List in 6z7r
Chlorine binding site 2 out of 2 in the Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl505

b:16.0
occ:1.00
HG1 D:THR80 2.1 14.5 1.0
HD22 D:ASN113 2.4 17.2 1.0
HE1 D:PHE110 2.6 17.4 1.0
H D:ALA81 2.6 11.0 1.0
HA D:CYS78 2.8 7.2 1.0
OG1 D:THR80 3.0 11.9 1.0
HB2 D:ALA81 3.0 20.8 1.0
HD3 D:PRO421 3.0 24.0 1.0
HD2 D:PRO421 3.1 24.0 1.0
HB2 D:CYS78 3.2 6.8 1.0
N D:ALA81 3.2 9.0 1.0
ND2 D:ASN113 3.3 14.2 1.0
HG2 D:PRO421 3.3 20.2 1.0
CD D:PRO421 3.4 19.9 1.0
HB3 D:ASN113 3.4 18.5 1.0
CE1 D:PHE110 3.4 14.3 1.0
CA D:CYS78 3.5 6.0 1.0
H D:THR80 3.6 18.0 1.0
HD1 D:PHE110 3.6 20.5 1.0
C D:CYS78 3.7 7.6 1.0
HD21 D:ASN113 3.7 17.2 1.0
CB D:ALA81 3.7 17.2 1.0
CG D:PRO421 3.7 16.7 1.0
O D:CYS78 3.8 10.3 1.0
HB3 D:ALA81 3.8 20.8 1.0
CB D:CYS78 3.8 6.0 1.0
CB D:THR80 3.9 9.8 1.0
HG3 D:PRO421 3.9 20.2 1.0
CA D:ALA81 3.9 9.2 1.0
N D:THR80 3.9 14.9 1.0
HB D:THR80 4.0 12.0 1.0
CD1 D:PHE110 4.0 16.9 1.0
C D:THR80 4.0 9.3 1.0
CA D:THR80 4.1 12.1 1.0
HA D:ALA81 4.2 11.2 1.0
HB3 D:CYS78 4.2 6.8 1.0
CG D:ASN113 4.2 16.1 1.0
CB D:ASN113 4.2 15.3 1.0
N D:PRO79 4.4 11.7 1.0
HA D:ALA420 4.5 21.2 1.0
HB1 D:ALA81 4.5 20.8 1.0
CZ D:PHE110 4.5 17.4 1.0
HD2 D:PRO79 4.5 17.1 1.0
HZ D:PHE110 4.6 21.1 1.0
HB2 D:ASN113 4.7 18.5 1.0
O D:VAL77 4.7 14.5 1.0
N D:CYS78 4.7 11.3 1.0
C D:PRO79 4.8 13.4 1.0
N D:PRO421 4.8 17.8 1.0
HB1 D:ALA420 4.9 17.1 1.0
HE1 D:MET183 4.9 13.5 1.0

Reference:

S.Zacarias, A.Temporao, P.Carpentier, P.Van Der Linden, I.A.C.Pereira, P.M.Matias. Exploring the Gas Access Routes in A [Nifese] Hydrogenase Using Crystals Pressurized with Krypton and Oxygen. J.Biol.Inorg.Chem. V. 25 863 2020.
ISSN: ESSN 1432-1327
PubMed: 32865640
DOI: 10.1007/S00775-020-01814-Y
Page generated: Sat Dec 12 14:45:38 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy